Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2584 120 7e-22 seq2102 120 7e-22 seq1768 95.1 3e-14 >seq2584 Length=5567 Score = 120 bits (132), Expect = 7e-22 Identities = 276/416 (66%), Gaps = 0/416 (0%) Strand=Plus/Minus Query 243319 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 243378 |||||||||||| | ||||| || || ||| | ||||||||||| ||| ||| Sbjct 3365 GTTGAAGGTATTTTCTTTTCAGGATCATTTTGCTCGATCTTTTGGCTCAAGAAACGTGGT 3306 Query 243379 GTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAA 243438 |||||||||| | | | || ||||| | || ||| || ||||| ||||| Sbjct 3305 TTGATGCCTGGTTTAAGCTTTTCGAACGAACTTATTTCTCGTGATGAGGGTCTTCATTGT 3246 Query 243439 CAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACGGTCAAA 243498 | || | || |||||||| |||||| |||||||| | |||| | | Sbjct 3245 GACTTTGCCTGCCTCATGTATTCCAAGCTCATCAACAAGCTTTCTAACGAACGTATTCAT 3186 Query 243499 CAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGC 243558 |||| || || || |||| || |||||| |||| | | || || ||||| Sbjct 3185 GAAATTATTGGGGATGCTGTTGCAATTGAAAAGCAATTTGTCTCGGAATCTCTTCCAGTA 3126 Query 243559 CGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGC 243618 || ||||| |||||||| |||||| | | ||||| |||||| || || ||| Sbjct 3125 GAACTCATTGGTATGAACTCATCTCTCATGTGCGAATACATTGAATTCTGTGCTGATCGC 3066 Query 243619 ATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATG 243678 || || || ||||| | || | ||||| ||||||| || || | || ||| Sbjct 3065 CTTCTCCAAGCCCTTGGAGCTACCAAGCTTTACAATGCCAAGAATCCATTCGACTGGATG 3006 Query 243679 GAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTA 243734 || | || || |||||||| || || ||||| ||||||||||||||| |||| || Sbjct 3005 GACATGATATCTCTTCAAGGAAAGACCAACTTTTTCGAAAAGCGTGTCGGTGAATA 2950 >seq2102 Length=15428 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 334139 GAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAGCTG 334198 ||| | |||||| ||||| |||| || | ||||| || ||||| |||||||| || Sbjct 11692 GAGGTTGTGTTCAACGTACACAGTCTTAAGTTCATCCTTGGAAGGGAATCCTTCAAGTTG 11751 Query 334199 ACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACAGACC 334258 || || |||| || ||||| || || |||||||| |||||||| || || ||||| Sbjct 11752 GCCATTGGCAATGGCACGCATGAGGGTGGATTTACCACAACCGTTTGGACCGCAAAGACC 11811 Query 334259 GTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCACCATA 334318 |||||| | || ||| || || | || | |||||| || | ||| | ||||| || Sbjct 11812 GTAGCGATGACCCTTCTTGAGGTTCATGCGGGCATTGTTGAGCAAAATCATACCACCGTA 11871 Query 334319 TGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 || || || ||||||||||| || || || ||||| Sbjct 11872 AGCGAGGGAGAATTCACAATCGCAAAGGTCATCACC 11907 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 333315 TCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGA 333374 || || |||||||| || |||||||||| || || || |||| | || || | Sbjct 10874 TCCTTATCTTCACCAGATTGGAAACGCCATTGAATGTATTGATTGGCAGAGATATCCAAG 10933 Query 333375 TGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 333434 || | || ||||||||||||||||| || || || || |||| ||||||| || ||| Sbjct 10934 TGTTGTTCAATGTGGTGGAAAGCATGTTGAGCGACATAGGCAAAACGCATAGCAGGGTGC 10993 Query 333435 TTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTT 333494 ||||| ||| | || | || | || ||| ||| || | || |||||| | || | Sbjct 10994 TTCCACACAGTACCTTCAGTAGGCTCGGTTTCCCCAGTCAACATCTTAATCATGGTAGAT 11053 Query 333495 TTTCCCGCACCATTT 333509 || || ||||| ||| Sbjct 11054 TTACCAGCACCGTTT 11068 >seq1768 Length=20761 Score = 95.1 bits (104), Expect = 3e-14 Identities = 305/460 (66%), Gaps = 14/460 (3%) Strand=Plus/Plus Query 297252 TTGGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGATTCCACTCGA-ACCATTC 297310 |||||| || ||| || ||| | || |||||||| ||||| || || |||| |||||| Sbjct 1655 TTGGATGGTGACTTGGAATACTTGTGGACCAACCTGTACCAATGCC-CTCGGTACCATTG 1713 Query 297311 ACCAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTGT-CACCGTCATC 297369 || || | | || | || || ||||||||| ||| || | || || | || ||||| Sbjct 1714 ACAAGCAACATTGGTAAAATTGGTACATAATACGTTGGCTCTA-CTGGTTCTCCATCATC 1772 Query 297370 ATACAGATATTTCAGAAGA---TTATCGTCCGTATCGACGAAAACCTGTCGAGTCTGAGG 297426 ||||| ||| | || ||| | ||| ||| | | || |||| | || || | Sbjct 1773 ATACATATACTCCAAAAGTGGTTCATCTTCC-TCTGGA--AAAATCAACCGTGTGTACTT 1829 Query 297427 GTTCAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGA 297486 || || | || || ||||| || | |||||| || || ||||| || || | | Sbjct 1830 GTGCAAATAAGTAAAGATATACCGAGGACTCGCAGCGTCTTTGCCACCTTGTAAACGAGT 1889 Query 297487 ACCGAACTGGCCCTCCGGCAACAACCAGTTGA-TGTTATTGCTTCCGACATAATCCTGTG 297545 || || || ||| || ||||| || || | ||||| || ||||| || || | Sbjct 1890 GCCAAATTGCCCCGATGGATACAAC-AGAGGAATATTATTTGCCCCAACATAGTCTTGAG 1948 Query 297546 CAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTG 297605 | | ||| | ||||| | || || ||||||||||||||||| || ||| | || |||| Sbjct 1949 CCATGTTTATAATGGTACTGTGAAGCGATGCTTCGCCATGGTGGTAAGCGGTGTGTTCTG 2008 Query 297606 CAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGC-T 297664 || ||||| | || ||||| || | || | || | || || ||| || | Sbjct 2009 CACAATAACCAGCAAGTTGAGCAACTTTAATTTCCTTTGTGAGTTTTCG-GCGAAGGCAT 2067 Query 297665 GAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAA 297704 | | | ||||| || || ||||| |||| |||||||| Sbjct 2068 GCGAAAAGTACTTTACGCTGGGAAGGCTTGAGACCATCAA 2107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102804641243550