Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq224 214 2e-50 >seq224 Length=84125 Score = 214 bits (236), Expect = 2e-50 Identities = 792/1230 (64%), Gaps = 31/1230 (3%) Strand=Plus/Minus Query 114103 CCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGG 114162 |||||||||| | |||| |||||||| | | || || || || | || |||||||| Sbjct 28349 CCACATATCATATTGGAAGATACCTTTGCTTACAGGAGAGCCTGCATACGTTTCGTATGG 28290 Query 114163 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAA 114222 || | | || | ||| | | || | || ||| || || || || ||||| Sbjct 28289 ACCAAATTCTTTGGCAATTTCCATGGATGTTTCCATGGATGCATGGTAAATAGTTTCAAA 28230 Query 114223 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-AATAA 114281 || || ||| | | |||||| || | || ||||| | || || | ||||| Sbjct 28229 GATTTGAATATTGAGTTTCTTGGCTTCAGCAGATTCAAAAG-GATAACCCATGAGAATAA 28171 Query 114282 ATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT-- 114339 | |||| || || ||||| ||||| | ||||| || ||||| | |||||| ||| Sbjct 28170 AGGCATCAGCAAGCCCTTGAACACCAATACCAATAGGACGATGACGCATATTG--CTTCG 28113 Query 114340 TCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 114399 | ||| || | || || | || | || || || | |||| ||| || || Sbjct 28112 TTTAGCTTCTTCAATAGGGTAGTAGTTGATTTCAATCACTTTGTTTAAATTGCGAGTAAC 28053 Query 114400 AACCTTTGTGATTTCATGAAGCTTTTCGTAA--TCAAAACTGCGAGTCTCTTCATTGACA 114457 || || ||||||| ||| | || |||| ||||| | | ||||||||| Sbjct 28052 AATTTTGGTGATTTTATGCAAATTG--GTAAAGTCAAATACACCA------TCATTGACA 28001 Query 114458 TACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTAC 114517 | || | ||| || || || |||| ||| ||||||| ||||| || || || Sbjct 28000 AATTTTGAAAGAGCAATCGATGCCAAATTGCACACAGCCACTTCATCTTTGCTTGTATAT 27941 Query 114518 TCTATAATTTCCGTACACAAATTTGAACTC---TTAATGGTGCCCAAGTTCTTTTGATTT 114574 || |||| ||| ||||| || |||| ||||| || || ||||| | ||| || Sbjct 27940 TCGATAACTTCACAGCACAAGTT---ACTCGATTTAATAGTACCTAAGTTTTGTTGGTTC 27884 Query 114575 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGAC 114634 || || | || || ||||| ||||| | ||| ||||| || || || || |||| || Sbjct 27883 GATTTGGAATTGCAAGCATCTTTGTACAACATATATGGTGTACCAGTTTCGATTTGAGAA 27824 Query 114635 TTGAGAATAGCCTTCCAGACAT-CGGCGGCTGGCACAGTGGCGTTGG--CTCGCCCCTCC 114691 | |||||| || ||| | | | | | || | | || | || | | || || || Sbjct 27823 TCGAGAATGGCAAACCATAATTGCTGAGCCTTG---ATTGTCTTTCGAGCACGACCTTCA 27767 Query 114692 TCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGT 114751 || | || ||||| | |||||||| || | ||| | ||| | || | Sbjct 27766 GATTCAAATTTGGTGTACAAAGCTTCAAATTCCTTGCCCCAGCAATCTTGCAAGCCAGAA 27707 Query 114752 GCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGG 114811 || | || |||||| || ||| ||| | |||| | || ||||||||||| || | Sbjct 27706 GCTTCATTTGGGCAAAAAAGACTCCAATCACCATTTGCTTCGACACGCTTCATAAACAAA 27647 Query 114812 TCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 114871 || |||||||| | || | |||||||| ||| || | ||||| || ||||| Sbjct 27646 TCAGGGATCCACAAGGCATAAAAGAGATCACGAGCACGGTGTAGTTCATTGCCATGATTT 27587 Query 114872 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 114931 | |||||||| || | ||||| || ||||| ||||| || |||| || | Sbjct 27586 TTCTTGAGATCCAAAAACTCAAAAATATCAGCATGCCATGGTTCAAGATACATGGCAAAC 27527 Query 114932 GACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGA 114988 || |||||||| || |||| | |||| ||||| | || || |||| ||||| ||| Sbjct 27526 GAACCCTTACGCTTACCACCACCTTGGTCAACATAGCGAGCGGTATCATTGAATACTCGA 27467 Query 114989 AGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCT 115048 ||||| ||||||||||| | ||| |||||| || || |||||| | || | | Sbjct 27466 AGCATGGGAATGATACCGTTCGATGAGCCATTGGTACCACGAATATAACTATTTGTTGAG 27407 Query 115049 CTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCC 115108 | | || ||||| | || || ||||| || ||||| || || || || || | Sbjct 27406 CGAATATTGTGGATATTCACGCCGATACCACCAGCCCATTTGGAAATACAAGCACATTGT 27347 Query 115109 GTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTC 115168 | | | | | || || || || ||||| || |||| | || | ||| ||||| | Sbjct 27346 TTCAAAGTATCATAAATACCTTCAATCGAATCGTCCTTCATGGCCAAAAGAAAGCAAGAC 27287 Query 115169 GACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATA 115228 |||| |||||| | ||| |||||||| ||||| || || ||||| || ||| |||| | Sbjct 27286 GACAATTGTGGACGTGGAGTACCAGCATTGAAAAGAGTAGGTGTAGCATGGGTGAAGAAC 27227 Query 115229 CCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCG 115288 ||| ||| | || || || ||||| | | | ||| ||||| |||||||| Sbjct 27226 ATTTGACTCATGTATTCATAAGTGTCCAAAGCTCCAGCAATATCTTCTTTATGAATACCA 27167 Query 115289 ATCGAGACCCGCATAAACATGTATTGGGGT 115318 | | || ||||| | ||||| || ||| Sbjct 27166 ACAGCAACACGCATGATCATGTGCTGAGGT 27137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597313778915640