Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq580 127 2e-24 seq2092 116 4e-21 seq5008 109 5e-19 seq2232 104 2e-17 seq419 98.7 1e-15 >seq580 Length=37562 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || ||||| | || || | ||||| || ||||| ||||||||||||||||| Sbjct 8266 ACCACCACGCAAACGTAGGACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCACT 8325 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| | ||||| || || ||||| ||| |||| | || |||||||| || || Sbjct 8326 GAGAGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGGTCTGGTGG 8385 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || ||||| || ||||| ||||| || | | || | || || Sbjct 8386 GATGCCTTCCTTATCTTGGATCTTTTGTTTTACGTTATCAATCGAGTCCGAAGGTTCGAC 8445 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||||||||| || ||||||||||||||||| Sbjct 8446 ATCCAATGTAATTGTCTTGCCGGTCAACGTCTTTACGAAAATTTGCAT 8493 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||||||| | || ||||| || ||||||||||| || || | || | ||||| Sbjct 8057 ACTAGATGTAGAGTAGATTCCTTCTGAATGTTGTAGTCACTGAGAGAACGACCATCTTCG 8116 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || || ||||| ||| |||| | || || || || ||||| || |||||||| ||||| Sbjct 8117 AGTTGTTTGCCAGCAAAAATTAAACGTTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGA 8176 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 || ||||| || ||| || | || || | ||||| || | || | ||||| Sbjct 8177 ATCTTTTGTTTCACATTATCAATTGAGTCTGAAGGTTCCACGTCAAGTGTAATAGTCTTT 8236 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| || || |||||||||||||| Sbjct 8237 CCAGTCAATGTCTTGACGAAAATTTGCAT 8265 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| |||||||||||||| || | || || |||||||||| || || || Sbjct 7841 GTAGATTCCTTTTGAATGTTGTAGTCACTTAATGTACGACCGTCTTCAAGTTGTTTACCA 7900 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| | || || || || ||||| || ||||| || ||||| || |||||||| Sbjct 7901 GCGAAAATCAAACGTTGTTGATCCGGAGGGATGCCTTCCTTGTCTTGGATCTTTTGCTTG 7960 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | | || | || || || | || | ||| || || ||||||||| Sbjct 7961 ACATTATCAATCGAGTCGGATGGTTCAACATCCAAGGTAATGGTTTTTCCCGTCAAAGTT 8020 Query 64427 TTTACGAAAATTTGCAT 64443 || || || |||||||| Sbjct 8021 TTGACAAAGATTTGCAT 8037 >seq2092 Length=13256 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 |||||||| ||||| ||||||||||| | ||||| | ||||| || ||||||||| Sbjct 11891 GTCGATTCCTTTTGGATGTTGTAATCGCTCAAAGTGCGACCATCTTCGAGTTGCTTGCCG 11832 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || || || || |||||||| ||||| || ||||| ||||||||||| Sbjct 11831 GCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATTTTTTGCTTG 11772 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | | ||| | || || || | || | |||||| || ||||| || Sbjct 11771 ACATTATCAATCGAATCCGAAGGTTCGACATCCAATGTGATGGTCTTACCCGTCAAGGTC 11712 Query 64427 TTTACGAAAATTTGCAT 64443 |||||||| || ||||| Sbjct 11711 TTTACGAAGATCTGCAT 11695 >seq5008 Length=14815 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||||| || ||||||||||| ||||||||||| | || || | || Sbjct 6434 AAGGACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCGCTCAAAGTACGTCCATC 6375 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||| || ||||| ||| | || | || || || || |||||||| ||||| || || Sbjct 6374 TTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTC 6315 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || |||||||| ||| || | | ||| | || || || | || | ||| Sbjct 6314 TTGAATCTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGACATCCAACGTGATGGT 6255 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| ||||| || || ||||| || ||||| Sbjct 6254 CTTGCCTGTCAATGTCTTGACGAAGATCTGCAT 6222 >seq2232 Length=15861 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 |||||||| ||||||||||||||||| | || || | ||||| || ||||||||| Sbjct 592 GTCGATTCCTTTTGAATGTTGTAATCGCTCAAAGTACGACCATCTTCGAGTTGCTTGCCG 533 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || || || || |||||||| ||||| || || || || |||||||| Sbjct 532 GCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTTTGCTTG 473 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | | || | || || || | || | ||||||||| ||||| || Sbjct 472 ACGTTGTCAATCGAGTCCGAAGGCTCTACATCCAACGTGATGGTCTTGCCAGTCAATGTC 413 Query 64427 TTTACGAAAATTTGCATTTT 64446 || |||||||| ||||| || Sbjct 412 TTGACGAAAATCTGCATATT 393 >seq419 Length=23932 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| ||||| |||||||| || | || || | ||||| || || || ||| Sbjct 23482 GTAGATTCCTTTTGGATGTTGTAGTCGCTTAAAGTACGGCCATCTTCGAGTTGTTTACCG 23423 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| ||||||| || || || || |||||||| ||||| || ||||| || ||||| || Sbjct 23422 GCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTTTTGTTTA 23363 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | | || | || || || | || | ||||| |||||||| || Sbjct 23362 ACATTATCAATGGAGTCCGAAGGTTCGACGTCAAGTGTGATCGTCTTACCGGTCAACGTC 23303 Query 64427 TTTACGAAAATTTGCAT 64443 ||||| ||||||||||| Sbjct 23302 TTTACAAAAATTTGCAT 23286 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || ||||| |||||||| || || ||||| | ||||| || |||||||||||| | Sbjct 23932 TCCTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCAAAG 23873 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 ||||| || || || || || ||||| ||||| || ||||| || |||||||| ||| Sbjct 23872 ATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTG 23813 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | | ||| | || || || | || | ||| || || ||||| || || || Sbjct 23812 TCAATAGAATCCGAAGGTTCGACATCGAGGGTAATGGTTTTACCCGTCAATGTCTTGACA 23753 Query 64433 AAAATTTGCAT 64443 || |||||||| Sbjct 23752 AAGATTTGCAT 23742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499611492428520