Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq224 104 2e-17 >seq224 Length=84125 Score = 104 bits (114), Expect = 2e-17 Identities = 194/285 (68%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 || || || |||||||||||| | || ||||| || | || ||||| || || ||||| Sbjct 27420 TATATTCGTGGTACCAATGGCTCATCGAACGGTATCATTCCCATGCTTCGAGTATTCAAT 27479 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 | | || ||||| || ||||| |||||||| | | | |||||||| || || | ||| Sbjct 27480 GATACCGCTCGCTATGTTGACCAAGGTGGTGGTAAGCGTAAGGGTTCGTTTGCCATGTAT 27539 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || || || ||||| || || | | || | || || || || || ||||| Sbjct 27540 CTTGAACCATGGCATGCTGATATTTTTGAGTTTTTGGATCTCAAGAAAAATCATGGCAAT 27599 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || || | | || | || ||||| || || | ||| | || || | |||||||| Sbjct 27600 GAACTACACCGTGCTCGTGATCTCTTTTATGCCTTGTGGATCCCTGATTTGTTTATGAAG 27659 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAA 94356 || ||||| ||| | |||||||||||||| || |||||| Sbjct 27660 CGTGTCGAAGCAAATGGTGATTGGAGTCTTTTTTGCCCAAATGAA 27704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494690220514680