Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq580 122 6e-23 seq5008 118 8e-22 seq419 109 4e-19 seq2092 98.7 7e-16 seq2232 84.2 2e-11 >seq580 Length=37562 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| ||||| | || || |||||||| || || || ||||| ||||||||||| ||| Sbjct 8267 CCACCACGCAAACGTAGGACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCACTG 8326 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||| | |||||||||||| | ||||| || || ||||| ||| Sbjct 8327 AGAGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGGTCTGGTGGG 8386 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || || || |||||| | || || | || | ||| || Sbjct 8387 ATGCCTTCCTTATCTTGGATCTTTTGTTTTACGTTATCAATCGAGTCCGAAGGTTCGACA 8446 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || || || |||| || ||||| ||||||||||| Sbjct 8447 TCCAATGTAATTGTCTTGCCGGTCAACGTCTTTACGAAAATTTGCAT 8493 Score = 116 bits (128), Expect = 3e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || || || || ||||| || ||||| |||||||| || || | | | ||||| Sbjct 7826 AATACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCACTTAATGTACGACCGTCT 7885 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC- 15083 || | |||||| |||||| | |||||||| ||||| || || || ||||||||||| Sbjct 7886 TCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCCGGAGGGATGCCTTCCTTGTCT 7945 Query 15084 -ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | |||||| || ||| | || || | ||| ||| || || |||||||||| Sbjct 7946 TGGATCTTTTGC--TTGACATTATCAATCGAGTCGGATGGTTCAACATCCAAGGTAATGG 8003 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| || |||| |||||| ||||| ||||||||| Sbjct 8004 TTTTTCCCGTCAAAGTTTTGACAAAGATTTGCATA 8038 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || ||||| || | || || || || | ||| || || ||||| || ||||| || || Sbjct 8495 CCGCCTCGTAAACGCAACACCAAGTGCAAGGTCGATTCCTTTTGGATATTGTAGTCACTA 8554 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||| |||||||||||||| | |||||||| ||||| || ||| Sbjct 8555 AGAGTACGTCCATCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 8614 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| || || | || || | || | ||| ||| Sbjct 8615 ATACCTTCCTTGTCTTGAATTTTTTGCTTGACGTTATCAATCGAGTCCGAAGGTTCCACG 8674 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || || || || || || || ||||| |||||||| Sbjct 8675 TCCAACGTAATTGTCTTTCCGGTGAGTGTCTTGACAAAGATTTGCAT 8721 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | || |||| ||| || ||||| || || || |||||||| || ||| Sbjct 8039 CCACCACGTAAACGCAAGACTAGATGTAGAGTAGATTCCTTCTGAATGTTGTAGTCACTG 8098 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | ||||| | |||||||||||| | || ||||| ||||| || || Sbjct 8099 AGAGAACGACCATCTTCGAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGATCTGGAGGG 8158 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| ||| || ||| ||| | || || | || | ||| ||| Sbjct 8159 ATGCCTTCTTTGTCTTGAATCTTTTGTTTCACATTATCAATTGAGTCTGAAGGTTCCACG 8218 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||||| || || || |||| || || || |||||||||||| Sbjct 8219 TCAAGTGTAATAGTCTTTCCAGTCAATGTCTTGACGAAAATTTGCATA 8266 >seq5008 Length=14815 Score = 118 bits (130), Expect = 8e-22 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || |||||||| ||||| |||||||| |||||||||||||| | | | | | ||||| Sbjct 6430 ACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCGCTCAAAGTACGTCCATCTTCA 6371 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||||||| || | |||||||| ||||| || ||||| ||||||||||| | Sbjct 6370 AGTTGTTTGCCTGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGA 6311 Query 15088 A--TTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 | |||||| || ||| | || || | ||| | ||| || || || || ||||| | Sbjct 6310 ATCTTTTGC--TTGACATTATCAATCGAATCCGAAGGTTCGACATCCAACGTGATGGTCT 6253 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | ||||||| || || || || || ||||| Sbjct 6252 TGCCTGTCAATGTCTTGACGAAGATCTGCAT 6222 >seq419 Length=23932 Score = 109 bits (120), Expect = 4e-19 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 14986 TCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15045 || ||||| |||||||| ||||||||| | | | ||||| | ||| ||||| || | Sbjct 23932 TCCTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCAAAG 23873 Query 15046 ATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT--TTTGCTTTTTACAA 15103 || | ||| ||||| || |||||| ||||||||||| || ||||||| ||| Sbjct 23872 ATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTG--ACAT 23815 Query 15104 TTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTA 15163 | || |||| ||| | ||| || || | ||||||||||||||| |||| || || | Sbjct 23814 TGTCAATAGAATCCGAAGGTTCGACATCGAGGGTAATGGTTTTACCCGTCAATGTCTTGA 23755 Query 15164 CAAAAATTTGCAT 15176 |||| |||||||| Sbjct 23754 CAAAGATTTGCAT 23742 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| ||||| | | || || ||||| || || || ||||| |||||||| || | Sbjct 23742 TGCCACCACGCAAACGAAGGACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCAC 23683 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || | | | ||||| | |||||| ||||| | || | || ||||| || | Sbjct 23682 TAAGGGTGCGGCCATCTTCAAGTTGTTTACCAGCAAAAATGAGGCGTTGTTGATCTGGAG 23623 Query 15068 GAATTCCTTCCTTGTCACAAA--TTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTT 15124 |||| ||||||||||| || |||||| || || | || || | ||| | || || Sbjct 23622 GAATGCCTTCCTTGTCTTGAATCTTTTGC--TTGACGTTGTCAATGGAATC-CGATGGTT 23566 Query 15125 CTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || || | |||||||| ||||| |||| || || || || ||||||||| Sbjct 23565 CGACATCGAGAGTAATGGTCTTACCCGTCAATGTCTTCACGAAGATTTGCATA 23513 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || ||||| | ||||| || ||||| |||||||| ||||| | | | | | ||| Sbjct 23497 AAGACCAAATGCAATGTAGATTCCTTTTGGATGTTGTAGTCGCTTAAAGTACGGCCATCT 23438 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | |||||| || || | || | || ||||| || ||||| ||||||||||| Sbjct 23437 TCGAGTTGTTTACCGGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCTTGTCT 23378 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || || ||| ||| | || || | || | ||| ||||| | || || || Sbjct 23377 TGGATCTTTTGTTTAACATTATCAATGGAGTCCGAAGGTTCGACGTCAAGTGTGATCGTC 23318 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| |||| || ||||||||||||||||| Sbjct 23317 TTACCGGTCAACGTCTTTACAAAAATTTGCAT 23286 >seq2092 Length=13256 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15039 || || || ||||| |||||||||||||| | | | | | ||||| | ||| ||||| Sbjct 11891 GTCGATTCCTTTTGGATGTTGTAATCGCTCAAAGTGCGACCATCTTCGAGTTGCTTGCCG 11832 Query 15040 GCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTT 15099 || | |||||||| ||||| || ||||| ||||||||||| |||||| || Sbjct 11831 GCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATTTTTTGCTTG 11772 Query 15100 ACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTT 15159 ||| | || || | ||| | ||| || || || || ||||| ||||| |||| || Sbjct 11771 ACATTATCAATCGAATCCGAAGGTTCGACATCCAATGTGATGGTCTTACCCGTCAAGGTC 11712 Query 15160 TTTACAAAAATTTGCAT 15176 ||||| || || ||||| Sbjct 11711 TTTACGAAGATCTGCAT 11695 >seq2232 Length=15861 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 14980 GTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15039 || || || ||||| |||||||||||||| | | | | | ||||| | ||| ||||| Sbjct 592 GTCGATTCCTTTTGAATGTTGTAATCGCTCAAAGTACGACCATCTTCGAGTTGCTTGCCG 533 Query 15040 GCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC--ACAAATTTTGCTTT 15097 || | |||||||| ||||| || ||||| ||||||||||| | |||||| | Sbjct 532 GCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTTTGC--T 475 Query 15098 TTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAG 15157 | || | || || | || | ||||| || || || ||||| || || |||| | Sbjct 474 TGACGTTGTCAATCGAGTCCGAAGGCTCTACATCCAACGTGATGGTCTTGCCAGTCAATG 415 Query 15158 TTTTTACAAAAATTTGCATATT 15179 | || || ||||| |||||||| Sbjct 414 TCTTGACGAAAATCTGCATATT 393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357368770971905