Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2232 118 1e-21 seq419 113 4e-20 seq580 107 2e-18 >seq2232 Length=15861 Score = 118 bits (130), Expect = 1e-21 Identities = 176/246 (72%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 126869 ACCATTTACTATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTT 126928 ||||| ||| ||| | ||||| || | || | ||||| || | || || || ||| Sbjct 638 ACCATGCACTTTAC--CACCACCACGAAGACGAAGGACCAAGTGCAAAGTCGATTCCTTT 581 Query 126929 TGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAAT 126988 ||||| |||||||||| || || ||| ||| || || || || || || ||||||| Sbjct 580 TGAATGTTGTAATCGCTCAAAGTACGACCATCTTCGAGTTGCTTGCCGGCAAAGATCAAA 521 Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGAC 127047 || || ||||| ||||| || || ||||||||| ||| || ||||||| ||||| | | Sbjct 520 CGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTTTGCTTGACGTTGT-CAAT 462 Query 127048 GGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 127107 | ||||| | ||| || || | || | || ||||| |||| || || || ||||| Sbjct 461 CGAGTCCGAAGGCTCTACATCCAACGTGATGGTCTTGCCAGTCAATGTCTTGACGAAAAT 402 Query 127108 CTGCAT 127113 |||||| Sbjct 401 CTGCAT 396 >seq419 Length=23932 Score = 113 bits (124), Expect = 4e-20 Identities = 168/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || || || | |||||||| | || || || ||||| ||||||||||||| | Sbjct 23056 CCACCACGCAAACGAAGAACCAAATGCAATGTGGATTCCTTTTGGATATTGTAATCGCTC 22997 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || || || || ||||| |||| | || || ||||| ||||| Sbjct 22996 AGGGTACGACCATCTTCGAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGAGGA 22937 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||| || || || ||||||| |||| || | || ||||| ||| || Sbjct 22936 ATGCCTTCCTTATCTTGAATCTTTTGCTTGACGTTG-TCAATGGAGTCCGATGGCTCAAC 22878 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATT 127121 |||| || | || || || || || || || ||||| || ||||||| || || Sbjct 22877 ATCGAGCGTGATTGTCTTCCCCGTGAGTGTCTTGACAAAGATTTGCATGGTTTCTT 22822 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| |||||||| | ||||| || ||||| || ||||| |||| Sbjct 23512 CCACCACGAAGACGCAAGACCAAATGCAATGTAGATTCCTTTTGGATGTTGTAGTCGCTT 23453 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || || ||||| || || | || | || || ||||| ||||| Sbjct 23452 AAAGTACGGCCATCTTCGAGTTGTTTACCGGCAAAAATGAGGCGTTGTTGATCTGGAGGA 23393 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| |||||||| ||| || || || | | || | || ||||| | ||||| Sbjct 23392 ATGCCTTCCTTGTCTTGGATCTTTTGTTTAACATTATCAATGGAGTCCGAAGGTTCGACG 23333 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| || ||||||| || ||||||||||| |||||| Sbjct 23332 TCAAGTGTGATCGTCTTACCGGTCAACGTCTTTACAAAAATTTGCATG 23285 >seq580 Length=37562 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || ||||| ||||||||||| || | || || || ||||| |||||||| || | Sbjct 8495 CCGCCTCGTAAACGCAACACCAAGTGCAAGGTCGATTCCTTTTGGATATTGTAGTCACTA 8554 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | ||||| ||||| ||||||| || || ||||| ||||| Sbjct 8555 AGAGTACGTCCATCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 8614 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || |||||||| ||||| ||||||| | || | | ||||| | || || Sbjct 8615 ATACCTTCCTTGTCTTGAATTTTTTGCTTGACGTTATCAATCGAGTCCGAAGGTTCCACG 8674 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTT 127118 || | || | || || ||||| || || || ||||| || |||||| ||| Sbjct 8675 TCCAACGTAATTGTCTTTCCGGTGAGTGTCTTGACAAAGATTTGCATGACTT 8726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475469101927920