Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq580 132 4e-26 seq419 123 2e-23 seq2092 102 7e-17 seq5008 95.1 1e-14 seq2232 86.0 6e-12 >seq580 Length=37562 Score = 132 bits (146), Expect = 4e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || ||||||||||| || || ||||| |||| || ||| || | ||| Sbjct 8290 ATGAAGTGTGGATTCCTTTTGAATGTTGTAATCACTGAGAGTGCGGCCATCTTCGAGTTG 8349 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| || || | ||||||||||||||||| || || |||||||| |||||||| || || Sbjct 8350 TTTGCCAGCAAAAATCAATCGTTGCTGGTCTGGTGGGATGCCTTCCTTATCTTGGATCTT 8409 Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 |||||| | || | || | | ||| |||| ||||| || | |||| || ||||||| Sbjct 8410 TTGTTTTA-CGTTATCAATCGAGTCCGAAGGTTCGACATCCAATGTAATTGTCTTGCCGG 8468 Query 45316 TTAGAGTTTTTACAAAAATTTGCATCGCGC 45345 | | || ||||| |||||||||||| ||| Sbjct 8469 TCAACGTCTTTACGAAAATTTGCATCCCGC 8498 Score = 122 bits (134), Expect = 8e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 |||||| | |||| || ||||||||||||||||| || || || | || ||| Sbjct 8509 CAACACCAAGTGCAAGGTCGATTCCTTTTGGATATTGTAGTCACTAAGAGTACGTCCATC 8568 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 ||||||||||| || || | ||||| ||||| || || || ||||| ||||| || || Sbjct 8569 TTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTC 8628 Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 |||||||||||| |||| || | || | | ||| |||| || || || | |||| | Sbjct 8629 TTGAATTTTTTGCTTGA-CGTTATCAATCGAGTCCGAAGGTTCCACGTCCAACGTAATTG 8687 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || ||||| || || || ||||| |||||||| Sbjct 8688 TCTTTCCGGTGAGTGTCTTGACAAAGATTTGCAT 8721 Score = 109 bits (120), Expect = 5e-19 Identities = 167/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 45103 TTTATTTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATAT 45162 || ||| || ||||| || || | ||| || | || || || ||||||||||| || | Sbjct 7800 TTAATTACATGCCTCCACGAAGACGCAATACCAAGTGGAGAGTAGATTCCTTTTGAATGT 7859 Query 45163 TATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCT 45222 | || || || | || | || || | |||||| || ||| | ||||| ||||| | Sbjct 7860 TGTAGTCACTTAATGTACGACCGTCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTT 7919 Query 45223 GGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGG 45282 | ||||| || |||||||| || ||||| || ||||| |||| || | | ||||| Sbjct 7920 GATCCGGAGGGATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTATCAATCGAGTCGG 7979 Query 45283 AAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | | || || || | |||| ||||| || || | |||||| ||||| |||||||| Sbjct 7980 ATGGTTCAACATCCAAGGTAATGGTTTTTCCCGTCAAAGTTTTGACAAAGATTTGCAT 8037 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 ||| |||||||| || || |||||||| || || || || || |||| | | ||| Sbjct 8053 CAAGACTAGATGTAGAGTAGATTCCTTCTGAATGTTGTAGTCACTGAGAGAACGACCATC 8112 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 || | |||||| || || | || || ||||| || || || || ||||||||||| || Sbjct 8113 TTCGAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGATCTGGAGGGATGCCTTCTTTGTC 8172 Query 45248 TTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 |||||| |||||||| | || | | ||| |||| || || || || |||| || Sbjct 8173 TTGAATCTTTTGTTTCACATTATCAATTGAGTCTGAAGGTTCCACGTCAAGTGTAATAGT 8232 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || || || ||||||||||| Sbjct 8233 CTTTCCAGTCAATGTCTTGACGAAAATTTGCAT 8265 >seq419 Length=23932 Score = 123 bits (136), Expect = 2e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||||| || ||||||||||||||||| |||||||| | ||| | ||| || | ||| Sbjct 23033 ATGCAATGTGGATTCCTTTTGGATATTGTAATCGCTCAGGGTACGACCATCTTCGAGTTG 22974 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 || || || | || | ||||| || || || ||||||||||| ||||||||||| || Sbjct 22973 CTTGCCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCCTTATCTTGAATCTT 22914 Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 ||| |||| || | || | || ||| || | ||| || ||||| || | || || || | Sbjct 22913 TTGCTTGA-CGTTGTCAATGGAGTCCGATGGCTCAACATCGAGCGTGATTGTCTTCCCCG 22855 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || ||||| |||||||| Sbjct 22854 TGAGTGTCTTGACAAAGATTTGCAT 22830 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || | ||||| || |||||||||||||| || || ||| Sbjct 23515 ATACCACCACGAAGACGCAAGACCAAATGCAATGTAGATTCCTTTTGGATGTTGTAGTCG 23456 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | || ||| || | |||||| || || | || | ||||| || || || Sbjct 23455 CTTAAAGTACGGCCATCTTCGAGTTGTTTACCGGCAAAAATGAGGCGTTGTTGATCTGGA 23396 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || ||||| || |||||||| | || | || ||| |||| ||| Sbjct 23395 GGAATGCCTTCCTTGTCTTGGATCTTTTGTTTAACATTATCAATGGAGTCCGAAGGTTCG 23336 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||| || ||||| | || ||||||||||||||||| Sbjct 23335 ACGTCAAGTGTGATCGTCTTACCGGTCAACGTCTTTACAAAAATTTGCAT 23286 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||||| || ||||||||||||||||| || ||||| | ||| || || | || Sbjct 23261 ATGCAATGTAGATTCCTTTTGGATATTGTAGTCGCTCAAAGTTCGTCCGTCTTCGAGCTG 23202 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| || || | || | ||||| || || || ||||||||||| ||||||||||| || Sbjct 23201 TTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCCTTATCTTGAATCTT 23142 Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 |||||| | || | || | || ||| || | ||||| || || || | ||| || |||| Sbjct 23141 TTGTTTCA-CGTTGTCGATGGAGTCCGATGGTTCGACGTCAAGTGTGATCGTCTTACCGG 23083 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | | ||| || ||||| |||||||| Sbjct 23082 TCAAAGTCTTAACAAAGATTTGCAT 23058 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||||||||| || || || || | ||| ||| || | |||| Sbjct 23716 TGAAGAGTCGATTCCTTTTGGATGTTGTAGTCACTAAGGGTGCGGCCATCTTCAAGTTGT 23657 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || | ||||| || || || ||||||||||| || |||||||| ||| Sbjct 23656 TTACCAGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTT 23597 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || |||| || | || | || || || | ||||| |||||||||| || || || || Sbjct 23596 TGCTTGA-CGTTGTCAATGGAATCCGATGGTTCGACATCGAGAGTAATGGTCTTACCCGT 23538 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || |||||||| Sbjct 23537 CAATGTCTTCACGAAGATTTGCAT 23514 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45150 TCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTAT 45209 ||||||||||| || || ||||||| || ||| || | ||| || || || | Sbjct 23932 TCCTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCAAAG 23873 Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 || | ||||| || || || ||||||||||| || ||||| || ||||| |||| Sbjct 23872 ATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTG 23813 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | | || |||| ||||| ||||| |||| ||||| || || | || || ||| Sbjct 23812 TCAATAGAATCCGAAGGTTCGACATCGAGGGTAATGGTTTTACCCGTCAATGTCTTGACA 23753 Query 45330 AAAATTTGCAT 45340 || |||||||| Sbjct 23752 AAGATTTGCAT 23742 >seq2092 Length=13256 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| || |||||||||||||| || |||||||| | || | ||| || | ||| Sbjct 11897 TGCAAAGTCGATTCCTTTTGGATGTTGTAATCGCTCAAAGTGCGACCATCTTCGAGTTGC 11838 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||| ||||| || || || ||||||||||| || |||||||||||| Sbjct 11837 TTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATTTTT 11778 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || |||| || | | || |||| ||||| || | || | || || || || Sbjct 11777 TGCTTGACATTATCAATCGAATCCGAAGGTTCGACATCCAATGTGATGGTCTTACCCGTC 11718 Query 45318 AGAGTTTTTACAAAAATTTGCATCGCGCGACCAATT 45353 | || ||||| || || ||||||| ||| | ||| Sbjct 11717 AAGGTCTTTACGAAGATCTGCATCGTTCGATCTATT 11682 >seq5008 Length=14815 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || ||||| |||||||| || |||||||| | || ||| || | ||| Sbjct 6425 ATGAAGAGTAGATTCTTTTTGGATGTTGTAATCGCTCAAAGTACGTCCATCTTCAAGTTG 6366 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| ||||| | ||||| ||||| || || || ||||||||||| || |||||||| || Sbjct 6365 TTTGCCTGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTT 6306 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||| |||| || | | || |||| ||||| || | || | || ||||| || Sbjct 6305 TTGCTTGACATTATCAATCGAATCCGAAGGTTCGACATCCAACGTGATGGTCTTGCCTGT 6246 Query 45317 TAGAGTTTTTACAAAAATTTGCATC 45341 | || || || || || |||||| Sbjct 6245 CAATGTCTTGACGAAGATCTGCATC 6221 >seq2232 Length=15861 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| || ||||||||||| || || |||||||| | || | ||| || | ||| Sbjct 598 TGCAAAGTCGATTCCTTTTGAATGTTGTAATCGCTCAAAGTACGACCATCTTCGAGTTGC 539 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||| ||||| || || || ||||| ||||| || || || || ||| Sbjct 538 TTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTT 479 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || |||| || | || | | ||| |||| ||| || || | || | || ||||| || Sbjct 478 TGCTTGA-CGTTGTCAATCGAGTCCGAAGGCTCTACATCCAACGTGATGGTCTTGCCAGT 420 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | || || || ||||| ||||| Sbjct 419 CAATGTCTTGACGAAAATCTGCAT 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451973068336680