Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq224 205 1e-47 >seq224 Length=84125 Score = 205 bits (226), Expect = 1e-47 Identities = 795/1233 (64%), Gaps = 35/1233 (3%) Strand=Plus/Minus Query 116063 CCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 116122 ||||||||||| | |||| |||||||| | | || || || || | || || |||| Sbjct 28350 CCCACATATCATATTGGAAGATACCTTTGCTTACAGGAGAGCCTGCATACGTTTCGTATG 28291 Query 116123 GGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAA 116182 | || | | || | ||| | | || | || ||| || || || || |||| Sbjct 28290 GACCAAATTCTTTGGCAATTTCCATGGATGTTTCCATGGATGCATGGTAAATAGTTTCAA 28231 Query 116183 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAA-AATA 116241 | || || ||| | | |||||| || | || ||||| | || | || | |||| Sbjct 28230 AGATTTGAATATTGAGTTTCTTGGCTTCAGCAGATTCAAAAG-GATAACCCATGAGAATA 28172 Query 116242 AATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT- 116300 || |||| || || ||||| ||||| | ||||| || ||||| | |||||| ||| Sbjct 28171 AAGGCATCAGCAAGCCCTTGAACACCAATACCAATAGGACGATGACGCATATTG--CTTC 28114 Query 116301 -TCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGA 116359 | ||| || | || || | || | || || || | |||| ||| || | Sbjct 28113 GTTTAGCTTCTTCAATAGGGTAGTAGTTGATTTCAATCACTTTGTTTAAATTGCGAGTAA 28054 Query 116360 CAACCTTTGTGATTTCATGAAGCTTTTCGTAA--TCAAAACTGCGAGTCTCTTCATTGAC 116417 ||| || ||||||| ||| | || |||| ||||| | | |||||||| Sbjct 28053 CAATTTTGGTGATTTTATGCAAATTG--GTAAAGTCAAATACACCA------TCATTGAC 28002 Query 116418 ATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTA 116477 | | || | ||| || || || |||| ||| ||||||| ||||| || || || Sbjct 28001 AAATTTTGAAAGAGCAATCGATGCCAAATTGCACACAGCCACTTCATCTTTGCTTGTATA 27942 Query 116478 CTCTATAATTTCCGTACACAAATTTGAACTC---TTAATGGTGCCCAAGTTCTTTTGATT 116534 || |||| ||| ||||| || |||| ||||| || || ||||| | ||| || Sbjct 27941 TTCGATAACTTCACAGCACAAGTT---ACTCGATTTAATAGTACCTAAGTTTTGTTGGTT 27885 Query 116535 TGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594 || || | || || ||||| ||||| | ||||||||| || || || || |||| || Sbjct 27884 CGATTTGGAATTGCAAGCATCTTTGTACAACATATATGGTGTACCAGTTTCGATTTGAGA 27825 Query 116595 CTTGAGAATAGCCTTCCATACAT-CGGCGGCTGGCACAGTGGCGTTGG--CTCGCCCCTC 116651 | |||||| || ||||| | | | | || | | || | || | | || || || Sbjct 27824 ATCGAGAATGGCAAACCATAATTGCTGAGCCTTG---ATTGTCTTTCGAGCACGACCTTC 27768 Query 116652 CTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCTG 116710 || | || ||||| | || ||||| || | ||| |||| ||| | || | Sbjct 27767 AGATTCAAATTTGGTGTACAAAGCTTCAAATTCCTTGCCC-CAGCAATCTTGCAAGCCAG 27709 Query 116711 GTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGA 116770 || | || ||| || || ||| ||| | |||| | || || |||||||| || | Sbjct 27708 AAGCTTCATTTGGGCAAAAAAGACTCCAATCACCATTTGCTTCGACACGCTTCATAAACA 27649 Query 116771 GGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGAT 116830 || |||||||| | || | |||||||| ||| || | ||||| || |||| Sbjct 27648 AATCAGGGATCCACAAGGCATAAAAGAGATCACGAGCACGGTGTAGTTCATTGCCATGAT 27589 Query 116831 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 116890 | | |||||||| || | ||||| || ||||| ||||| || |||| || | Sbjct 27588 TTTTCTTGAGATCCAAAAACTCAAAAATATCAGCATGCCATGGTTCAAGATACATGGCAA 27529 Query 116891 TTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGC 116947 || ||||| || || |||| | |||| ||||| | || || | || ||||| | Sbjct 27528 ACGAACCCTTACGCTTACCACCACCTTGGTCAACATAGCGAGCGGTATCATTGAATACTC 27469 Query 116948 GAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGA-GACTTGTTG 117006 ||||||| ||||||||||| | ||| |||||| || || |||||| | | ||||| Sbjct 27468 GAAGCATGGGAATGATACCGTTCGATGAGCCATTGGTACCACGAATATAACTATTTGTT- 27410 Query 117007 GCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCAC 117066 | | | || |||||| | || || ||||| || ||||| || || || || || Sbjct 27409 GAGCGAATATTGTGGATATTCACGCCGATACCACCAGCCCATTTGGAAATACAAGCACAT 27350 Query 117067 TCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAG 117126 | | | | | | || || || || ||||| || |||| | || | || ||||| Sbjct 27349 TGTTTCAAAGTATCATAAATACCTTCAATCGAATCGTCCTTCATGGCCAAAAGAAAGCAA 27290 Query 117127 CTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 ||||| |||||| | ||| |||||||| ||||| || || ||||| || ||| |||| Sbjct 27289 GACGACAATTGTGGACGTGGAGTACCAGCATTGAAAAGAGTAGGTGTAGCATGGGTGAAG 27230 Query 117187 ATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATA 117246 | ||| ||| | || || || ||||| | | ||| ||||| |||||| Sbjct 27229 AACATTTGACTCATGTATTCATAAGTGTCCAAAGCTCCAGCAATATCTTCTTTATGAATA 27170 Query 117247 CCGATTGAGACCCGCATAAACATGTATTGGGGT 117279 || | | || ||||| | ||||| || ||| Sbjct 27169 CCAACAGCAACACGCATGATCATGTGCTGAGGT 27137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613466302076280