Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq580 113 3e-20 seq2092 109 4e-19 seq419 96.9 2e-15 seq5008 95.1 8e-15 >seq580 Length=37562 Score = 113 bits (124), Expect = 3e-20 Identities = 172/244 (70%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| |||||||| ||||||| ||||| ||||| || ||| ||||| ||||| || | Sbjct 8491 CATC-CCGCCTCGTAAACGCAACACCAAGTGCAAGGTCGATTCCTTTTGGATATTGTAGT 8549 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | | | ||| |||| ||||||||||| || |||| || ||||| || ||||| | Sbjct 8550 CACTAAGAGTACGTCCATCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTG 8609 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 || | ||||| ||||| |||||||| || | | | | | ||| | || Sbjct 8610 GAGGAATACCTTCCTTGTCTTGAATTTTTTGCTTGACGTTATCAATCGAGTCCGAAGGTT 8669 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCGTGTG 39727 |||||||||| |||||||| || || || | || || || ||||| |||||| | || | Sbjct 8670 CCACGTCCAACGTAATTGTCTTTCCGGTGAGTGTCTTGACAAAGATTTGCATGACTTGAG 8729 Query 39728 TTTC 39731 ||| Sbjct 8730 CTTC 8733 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 39563 CATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTT 39622 |||| || | |||||| || ||||||||||||| || ||||| | || | |||||||| Sbjct 8109 CATCTTCGAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGATCTGGAGGGATGCCTTCTT 8168 Query 39623 TGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAA 39682 |||| || |||||||| | | | | || ||||| ||||||||| | |||| Sbjct 8169 TGTCTTGAATCTTTTGTTTCACATTATCAATTGAGTCTGAAGGTTCCACGTCAAGTGTAA 8228 Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || || || || || ||||| || ||||| Sbjct 8229 TAGTCTTTCCAGTCAATGTCTTGACGAAAATTTGCAT 8265 >seq2092 Length=13256 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || || ||||| |||||||| ||| ||||| || || |||||| |||| ||| || Sbjct 11909 CGAAGGACCAAGTGCAAAGTCGATTCCTTTTGGATGTTGTAATCGCTCAAAGTGCGACCA 11850 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | ||| || ||| |||| || ||||| || ||||| | || | |||||| ||| Sbjct 11849 TCTTCGAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTG 11790 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || |||||||| || | | | | | || | ||| || ||||| || || Sbjct 11789 TCTTGAATTTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGACATCCAATGTGATG 11730 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||| || || ||||||||||||||||| Sbjct 11729 GTCTTACCCGTCAAGGTCTTTACGAAGATCTGCAT 11695 >seq419 Length=23932 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||||||| || ||||||||||| || ||| ||||| ||||| || ||| Sbjct 23285 GCCACCACGCAAACGGAGGACCAAATGCAATGTAGATTCCTTTTGGATATTGTAGTCGCT 23226 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| ||| | || || | ||||| || |||| || | ||| || ||||| | || Sbjct 23225 CAAAGTTCGTCCGTCTTCGAGCTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGG 23166 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670 | |||||| || || || |||||||| | ||| | | | | ||| | ||| | Sbjct 23165 AATGCCTTCCTTATCTTGAATCTTTTGTTTCA-CGTTGTCGATGGAGTCCGATGGTTCGA 23107 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 |||| | || || || ||||| || ||||| || || ||||| |||||| Sbjct 23106 CGTCAAGTGTGATCGTCTTACCGGTCAAAGTCTTAACAAAGATTTGCATG 23057 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||||||||| || ||| ||||| || || || ||| Sbjct 23512 CCACCACGAAGACGCAAGACCAAATGCAATGTAGATTCCTTTTGGATGTTGTAGTCGCTT 23453 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || |||| || | |||||| ||| ||||||| | || || ||||| | || Sbjct 23452 AAAGTACGGCCATCTTCGAGTTGTTTACCGGCAAAAATGAGGCGTTGTTGATCTGGAGGA 23393 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| || |||||||||| | | | | ||| | ||| ||| Sbjct 23392 ATGCCTTCCTTGTCTTGGATCTTTTGTTTAACATTATCAATGGAGTCCGAAGGTTCGACG 23333 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | || || || ||||| || || || ||||| || || |||||| Sbjct 23332 TCAAGTGTGATCGTCTTACCGGTCAACGTCTTTACAAAAATTTGCATG 23285 >seq5008 Length=14815 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | ||| ||||||||| || || |||||| | Sbjct 6448 CCACCACGAAGACGAAGGACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCGCTC 6389 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| ||| |||| || | |||||| || |||| || ||||| || ||||| | || Sbjct 6388 AAAGTACGTCCATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGTTGATCTGGAGGA 6329 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| ||||| || ||||| || | | | | | || | ||| || Sbjct 6328 ATGCCTTCCTTGTCTTGAATCTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGACA 6269 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTC 39722 ||||| || || || || || || || || || |||||||||||||| || Sbjct 6268 TCCAACGTGATGGTCTTGCCTGTCAATGTCTTGACGAAGATCTGCATCTC 6219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347347022387189