Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq419 122 9e-23 seq580 107 2e-18 seq2092 89.7 5e-13 >seq419 Length=23932 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | ||||| || ||||| || |||| ||||| | | Sbjct 23514 ATGCAAATCTTCGTGAAGACATTGACGGGTAAGACCATTACTCTCGATGTCGAACCATCG 23573 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| | || |||| || | ||||| || || ||||| | || || Sbjct 23574 GATTCCATTGACAACG-TCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCA 23632 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || ||||||| || || ||||| || || || | |||||||| | |||||||| Sbjct 23633 ACAACGCCTCATTTTTGCTGGTAAACAACTTGAAGATGGCCGCACCCTTAGTGACTACAA 23692 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||||| |||| || || ||||| || |||||| | || ||| Sbjct 23693 CATCCAAAAGGAATCGACTCTTCACTTGGTCCTTCGTTTGCGTGGTGGC 23741 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || ||||| ||| | || || || || ||||| | |||||||| | | Sbjct 23286 ATGCAAATTTTTGTAAAGACGTTGACCGGTAAGACGATCACACTTGACGTCGAACCTTCG 23345 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | | ||||| |||| |||| ||||| || || ||||| | || ||| Sbjct 23346 GACTCCATTGATAATGTTAAACAAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAA 23405 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||||| || || ||||| || || || | || || | | |||||||||| Sbjct 23406 CAACGCCTCATTTTTGCCGGTAAACAACTCGAAGATGGCCGTACTTTAAGCGACTACAAC 23465 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || |||||||||| ||||| Sbjct 23466 ATCCAAAAGGAATCTACATTGCATTTGGTCTTGCGT 23501 Score = 113 bits (124), Expect = 5e-20 Identities = 173/243 (71%), Gaps = 3/243 (1%) Strand=Plus/Plus Query 38231 ACTCTTTaaaaaa-aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCG 38289 |||||| | ||| |||||||| || || || || |||||||| || || ||||| ||| Sbjct 22816 ACTCTTAAGAAACCATGCAAATCTTTGTCAAGACACTCACGGGGAAGACAATCACGCTCG 22875 Query 38290 ACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGA 38348 | || ||| | | ||| | | | |||| | || |||| || | || || || || Sbjct 22876 ATGTTGAGCCATCGGACTCCATTGACAACG-TCAAGCAAAAGATTCAAGATAAGGAAGGC 22934 Query 38349 ATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACC 38408 ||||| | || ||||| || || || | || ||||| || || || || | || ||| Sbjct 22935 ATTCCTCCAGATCAACAACGTCTTATCTTTGCTGGCAAGCAACTCGAAGATGGTCGTACC 22994 Query 38409 CTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGC 38468 || | ||| ||||| |||||||||||| | || |||||||||| || |||||| | || Sbjct 22995 CTGAGCGATTACAATATCCAAAAGGAATCCACATTGCATTTGGTTCTTCGTTTGCGTGGT 23054 Query 38469 GGC 38471 ||| Sbjct 23055 GGC 23057 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || || || || ||||| | |||||||| | | Sbjct 23058 ATGCAAATCTTTGTTAAGACTTTGACCGGTAAGACGATCACACTTGACGTCGAACCATCG 23117 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | |||| | ||| |||| || | || || || || ||||| | || || Sbjct 23118 GACTCCATCGACAACG-TGAAACAAAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCA 23176 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || || || | || || |||||||| || |||| || || | | ||||||||| Sbjct 23177 ACAACGTCTTATCTTTGCTGGTAAACAGCTCGAAGACGGACGAACTTTGAGCGACTACAA 23236 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||||| | || |||||||||| || |||||| | || ||| Sbjct 23237 TATCCAAAAGGAATCTACATTGCATTTGGTCCTCCGTTTGCGTGGTGGC 23285 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | ||||| |||||||| ||| |||| ||||| | | Sbjct 23742 ATGCAAATCTTTGTCAAGACATTGACGGGTAAAACCATTACCCTCGATGTCGAACCTTCG 23801 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | || |||| |||| ||||| || || ||||| | || ||| Sbjct 23802 GATTCTATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATTCCACCTGATCAA 23861 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | || ||||| || || || || | ||||| |||| |||||||||| Sbjct 23862 CAACGTCTCATCTTTGCCGGCAAGCAACTCGAAGATGGCCGCACTCTCAGCGACTACAAC 23921 Query 38424 ATCCAAAAGGA 38434 ||||||||||| Sbjct 23922 ATCCAAAAGGA 23932 >seq580 Length=37562 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| || || || || || | ||||| || | | Sbjct 8721 ATGCAAATCTTTGTCAAGACACTCACCGGAAAGACAATTACGTTGGACGTGGAACCTTCG 8662 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | || |||| | || ||||||| | ||||| || || ||||| | || || Sbjct 8661 GACTCGATTGATAACG-TCAAGCAAAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCA 8603 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || |||||||| |||| || | || || || | |||||||| Sbjct 8602 ACAACGTTTGATCTTTGCTGGCAAACAATTGGAAGATGGACGTACTCTTAGTGACTACAA 8543 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| |||| |||| |||||| ||||||| ||||||| Sbjct 8542 TATCCAAAAGGAATCGACCTTGCACTTGGTGTTGCGTTTACGAGGCGG 8495 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| | ||||| |||||||| ||| | || || || | || Sbjct 8037 ATGCAAATCTTTGTCAAAACTTTGACGGGAAAAACCATTACCTTGGATGTTGAACCATCC 7978 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | || || | | || |||| |||| ||||| || || || || | || || Sbjct 7977 GACTCGATTGATAATG-TCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCTCCGGATCA 7919 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | |||| ||| || ||||| || || |||| || || | | |||||||| Sbjct 7918 ACAACGTTTGATTTTCGCTGGTAAACAACTTGAAGACGGTCGTACATTAAGTGACTACAA 7859 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| ||||||||| | || || || ||||| ||||| Sbjct 7858 CATTCAAAAGGAATCTACTCTCCACTTGGTATTGCGT 7822 >seq2092 Length=13256 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || |||||||| || | ||||| || |||||||| | || ||||| | | Sbjct 11695 ATGCAGATCTTCGTAAAGACCTTGACGGGTAAGACCATCACATTGGATGTCGAACCTTCG 11754 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | || || | | || ||||||| | ||||| || || ||||| | || || Sbjct 11755 GATTCGATTGATAATG-TCAAGCAAAAAATTCAAGACAAGGAAGGCATTCCTCCAGATCA 11813 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || ||||| || || || || | ||||| | | ||| ||||| Sbjct 11814 ACAACGTTTGATCTTTGCCGGCAAGCAACTCGAAGATGGTCGCACTTTGAGCGATTACAA 11873 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||||||| |||| |||| ||||| || || Sbjct 11874 CATCCAAAAGGAATCGACTTTGCACTTGGTCCTTCG 11909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500139457230720