Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq224 262 5e-65 seq2584 116 5e-21 seq1768 84.2 3e-11 >seq224 Length=84125 Score = 262 bits (290), Expect = 5e-65 Identities = 913/1400 (65%), Gaps = 51/1400 (4%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| || || | ||||| ||| |||||||||| | | | Sbjct 27138 CCTCAGCACATGATCATGCGTGTTGCTGTTGGTATTCATAAAGAAGATATTGCTGGAGCT 27197 Query 111672 TTGGAGACATACGACAAGATG--TCCCGTGGTATGTTCATCCACGCAACACCAACCCTCT 111729 ||||| || || || | ||| || || | | ||| ||| || ||||| || || | Sbjct 27198 TTGGACACTTATGAATACATGAGTCAAATGTTCT--TCACCCATGCTACACCTACTCTTT 27255 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 |||| |||||||| ||| | || ||| |||| ||| || ||| | || | ||||| | Sbjct 27256 TCAATGCTGGTACTCCACGTCCACAATTGTCGTCTTGCTTTCTTTTGGCCATGAAGGACG 27315 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 |||| || | || ||||| | ||| | | ||||||| || || || ||||||| Sbjct 27316 ATTCGATTGAAGGTATTTATGATACTTTGAAACAATGTGCTTGTATTTCCAAATGGGCTG 27375 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGT-CTCGTATTAGAGGTACA 111908 |||||||||| || | ||||| || | | |||||| | | |||| | ||||| Sbjct 27376 GTGGTATCGGCGTGAATATCCACAATATTCG-CTCAACAAATAGTTATATTCGTGGTACC 27434 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 ||||| ||| | ||||| ||||| |||||||| ||||| || | || || |||||| Sbjct 27435 AATGGCTCATCGAACGGTATCATTCCCATGCTTCGAGTATTCAATGATACCGCTCGCTAT 27494 Query 111969 GTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 || |||||| ||| || || ||||| || | || | |||||||| |||||||| Sbjct 27495 GTTGACCAAGGTGGTGGTAAGCGTAAGGGTTCGTTTGCCATGTATCTTGAACCATGGCAT 27554 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATG---AGGA--GGCGC 112080 || ||||| | ||||| ||| |||||| || | ||| | || | | Sbjct 27555 GCTGATATTTTTGAGTT------TTTGGATCTCAAGAAAAATCATGGCAATGAACTACAC 27608 Query 112081 GGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 |||| || |||||||| | || | ||||| || ||| | || |||||| | || || Sbjct 27609 CGTGCTCGTGATCTCTTTTATGCCTTGTGGATCCCTGATTTGTTTATGAAGCGTGTCGAA 27668 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 | | ||| ||||| ||| ||||| ||| | | || | || | ||| | | Sbjct 27669 GCAAATGGTGATTGGAGTCTTTTTTGCCCAAATGAAGCTTCTGGCTTGCAAGATTGCTGG 27728 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACG 112259 || |||| |||||||| | ||||| || | || ||| |||| || ||| Sbjct 27729 GGCAAGGAATTTGAAGCTTTGTACACCAAATTTGAATCTGAAGGTCGTGCTCGAAAGACA 27788 Query 112260 GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 112319 | ||| | | ||| || |||||| | ||||||| ||| |||||||||||| Sbjct 27789 ATCAAGGCTCAGCAATTATGGTTTGCCATTCTCGATTCTCAAATCGAAACTGGTACACCA 27848 Query 112320 TATATGCTTTACAAAGACGCCTGTAA-CCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 |||||| | |||||||| || || || | ||| | || ||| | || || ||| || Sbjct 27849 TATATGTTGTACAAAGATGCTTGCAATTCCAAATCG-AACCAACAAAACTTAGGTACTAT 27907 Query 112379 CAA---GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 112435 || |||| ||| | || ||| | | |||| |||| ||||||||| ||| Sbjct 27908 TAAATCGAGT---AACTTGTGCTGTGAAGTTATCGAATATACAAGCAAAGATGAAGTGGC 27964 Query 112436 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATT 112495 |||||| || | ||||| || ||||| | || | ||| || || | ||| Sbjct 27965 TGTGTGCAATTTGGCATCGATTGCTCTTTCAAAATTTGT-----CAATGATGGTG-TATT 28018 Query 112496 TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTAT 112555 ||| | | || | || || | || |||| ||| || || |||||| ||| || Sbjct 28019 TGACTTTACCAATTTGCATAAAATCACCAAAATTGTTACTCGCAATTTAAACAAAGTGAT 28078 Query 112556 TGATAGAAATTTTTACCCCGTTG-AGA--CTGCTCGTAAATCTAATATGAGACACCGTCC 112612 ||| | || | ||||| ||| ||| || || || | |||||| | || ||||| Sbjct 28079 TGAAATCAACTACTACCCTATTGAAGAAGCTAAACG--AAGC-AATATGCGTCATCGTCC 28135 Query 112613 AATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGA 112672 |||||| | ||||| ||||| || || |||| || ||||| | | | ||||| Sbjct 28136 TATTGGTATTGGTGTTCAAGGGCTTGCTGATGCCTTTATTCTCATGGGTTATCCTTTTGA 28195 Query 112673 TTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCT 112732 || | ||||| ||| || ||||| | || ||||| || || || || || | | Sbjct 28196 ATCTGCTGAAGCCAAGAAACTCAATATTCAAATCTTTGAAACTATTTACCATGCATCCAT 28255 Query 112733 TGAGGC-GAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 112791 || | | | | ||| || || | ||||||||| ||||| | || || |||| Sbjct 28256 GGAAACATCCATGGAAATTGCCAAAGAAT-TTGGTCCATACGAAACGTATGCAGGCTCTC 28314 Query 112792 CAGCTTCACAAGGGGTGCTT-CAATTTGATATGTGGGAAG---GTGAGACCAAGCTTCAC 112847 | | | ||| || ||| |||| ||||||||||| | | || || ||| Sbjct 28315 CTG-TAAGCAAAGGTATCTTCCAATATGATATGTGGGGTGTTTCTCCAACAAATCTT--- 28370 Query 112848 TACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 112907 | ||||||| | ||||| | | | || | ||| |||| || ||||||| Sbjct 28371 TGGGACTGGGCTACACTCAAAGCTCAAGTGGCCAAGCATGGTATTCGCAATTCTCTTTTG 28430 Query 112908 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 112967 | || |||||||||||||| || || |||||||| | || || ||||||| ||||| Sbjct 28431 CTTGCCCCAATGCCAACAGCTTCTACTGCACAAATTCTTGGCAACAATGAATCAATTGAA 28490 Query 112968 CCCTACACGACGAACATCTA 112987 || | || | ||||| || Sbjct 28491 CCATTTACATCCAACATGTA 28510 >seq2584 Length=5567 Score = 116 bits (128), Expect = 5e-21 Identities = 543/849 (64%), Gaps = 26/849 (3%) Strand=Plus/Minus Query 101784 TGGGAACTCTATAAGAAGGCTCAAATGAGTAATTGGACTGCTGAAGAGGTAGATCTCTCA 101843 |||||| | |||||||| ||| || ||| ||||||||| ||||| ||||||| Sbjct 3785 TGGGAAATGTATAAGAAAGCTGAAGCTAGTTTTTGGACTGCAGAAGAATTAGATCTTGTC 3726 Query 101844 AAGGATTTGGACGATTGGAAGACTCTAAATGAAAATGAAAAGAAATTCATAAAATACATC 101903 | ||| || | ||||||| | || | || |||||| || || | | | Sbjct 3725 CATGATATGAAAGATTGGACAAAACTTACGGACAATGAACGATTCTTTATTACCCATGTA 3666 Query 101904 CTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATATCAATAACAACTTTGCT 101963 ||||||| ||||| | || ||||| ||||| ||| ||| | | || ||| | Sbjct 3665 TTGGCATTTTTTGCAGCATCGGATGGTATTGTAAATGAAAATTTGGCCATGAATTTTTCC 3606 Query 101964 GATGAGGTGCAATCCTCTGAAGCGAGATCTTTCTATGCGTATCAATGTCATAATGAAATG 102023 |||| || ||| ||||||| |||| ||| |||| | |||| | || |||| Sbjct 3605 AATGAAGTACAAGTACCTGAAGCTAGATGTTTTTATGGATTTCAAATTGCTATCGAAAAT 3546 Query 102024 GTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAG 102083 | ||| || || ||||| || | ||||| ||||| || || || Sbjct 3545 ATTCATTCAGAAGTTTATTCGTTGCTCATTGATACTTATATCAAGGACATTGTGGAAAAA 3486 Query 102084 AAGCAGCTCTTTGAAGCC-ATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGC 102142 | | | ||||| | | || | || |||| ||| | ||| ||||| | ||||| Sbjct 3485 GATCGTGT-TTTGAGGGCTATTGATACGATTCCTTGTGTACAACGTAAAGCTAAATGGGC 3427 Query 102143 TATGAAGTGGTTTGATA-CAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGT 102201 | | || |||| || |||| | || | | | ||| || || | | || ||||| Sbjct 3426 TCTTAAATGGTGCAATGGCAAAATTGC-TGCGTATGCAGAACGTATTGTAGCCTTTGCTG 3368 Query 102202 GTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAG 102261 |||||| ||||| ||||| || || || || ||| | || | |||||||||||| || | Sbjct 3367 CTGTTGAAGGTATTTTCTTTTCAGGATCATTTTGCTCGATCTTTTGGCTCAAGAAACGTG 3308 Query 102262 GTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACC 102321 || | ||||| ||| | |||| || ||||| ||||| |||||||| ||||| || || Sbjct 3307 GTTTGATGCCTGGTTTAAGCTTTTCGAACGAACTTATTTCTCGTGATGAGGGTCTTCATT 3248 Query 102322 AAGAGTTTGC--GGTGGAACTTTTCAAATTATTGCGTATTAAACCAA-----CGACTGAG 102374 || ||||| | | | ||| || || || || ||| | | || Sbjct 3247 GTGACTTTGCCTGCCTCATGTATTCCAA-----GCTCATCAA--CAAGCTTTCTAACGAA 3195 Query 102375 ACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAGGGATTCATATTGGATGCC 102434 ||||||| ||| || ||| || |||| ||||| ||| ||| | | ||| | Sbjct 3194 CGTATTCATGAAATTATTGGGGATGCTGTTGCAATTGAAAAGCAATTTGTCTCGGAATCT 3135 Query 102435 CTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAGATGTCCGAATATATTG-AGTATGT 102493 |||||| | ||||| |||||||| || |||| |||||| |||| | | ||| Sbjct 3134 CTTCCAGTAGAACTCATTGGTATGAACTCATCTCTCATGTGCGAATACATTGAATTCTGT 3075 Query 102494 ATCTGATAG-ATTGTTGAAGCAGATCGGGGTGCCTCCAA--TTTGGAACTCCAAGAATCC 102550 ||||| | || | |||| | || || |||| ||| || |||||||||| Sbjct 3074 -GCTGATCGCCTTCTCCAAGC---CCTTGGAGCTACCAAGCTTTACAATGCCAAGAATCC 3019 Query 102551 ATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAAAGAGGGT 102610 ||| |||| ||||| | || || | || ||||| ||||| ||||||||| | || Sbjct 3018 ATTCGACTGGATGGACATGATATCTCTTCAAGGAAAGACCAACTTTTTCGAAAAGCGTGT 2959 Query 102611 TGGGGACTA 102619 || || || Sbjct 2958 CGGTGAATA 2950 >seq1768 Length=20761 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 176888 GAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGA 176947 || ||||| | ||||| | | |||||||| ||||| || ||||| || ||| | | Sbjct 2775 GAAGCATCTCTGACATTAAGAAATTTCCCACGCAGAGGAAATACACCATAAGTATCTCTA 2834 Query 176948 CCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATG 177007 ||||| ||||| || || || || || || | ||| || |||||||| || || | ||| Sbjct 2835 CCAACAACAGAAAGCCCAGCCACTGCAAGTGCTTTAGCCGAATCACCTTCAGTTAAGATC 2894 Query 177008 AGTGTACACTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGG 177063 | ||| || | | || |||| | || ||| || ||||| ||||||||||| Sbjct 2895 AATGTGCAATCTGCTGAACGTGCACTGCCAGCCAAATTAGCATCCTCCAATTTGGG 2950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620701019759760