Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq224 325 5e-84 seq1925 102 1e-16 seq1768 98.7 1e-15 >seq224 Length=84125 Score = 325 bits (360), Expect = 5e-84 Identities = 1195/1843 (65%), Gaps = 55/1843 (3%) Strand=Plus/Minus Query 109405 GAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAA 109464 || || || || ||||| || || || || ||| ||||| ||||| | |||||| || Sbjct 28858 GAACGTAGGTAGTACATGCCTGTCTTAAGTCCACGTTTCCAAGCGTAAAAATGCATCGAG 28799 Query 109465 GAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATG 109524 | ||||||| | | ||| | ||| | |||||||| || || ||| ||| Sbjct 28798 GTGAGTTTGCTCACACTTGGATCGGCAATATGGACATTCATCGATTGCGATTGACAGATA 28739 Query 109525 AATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTC 109584 ||| |||||||||||| || | || | ||| |||||| ||| |||||| || ||| Sbjct 28738 AATGCACCACGATCAGCAGCAAGATCTAAAATAATCTTTTGCTTAACTTCCCATACTGTC 28679 Query 109585 TTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCC 109644 ||||| | | |||||| | ||||| | | |||||||| | |||| | | Sbjct 28678 TTGTAAATGTCTTTGATACGTTTTGGAATACTTAATACGTTTTGAACACTACCACGATCA 28619 Query 109645 TTCACCATGAGAT--CCTTCATCT-CTTTCGACCAGAGACCGACCTTTTTGAGATCGT-C 109700 | | || ||| | | | || | ||| || ||||| | | | || || | | Sbjct 28618 TGTAAAATTTGATTACGTACTTCAGCATTC---CAAAGACCCAAAGATATAAGTTCTTTC 28562 Query 109701 AACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTT 109760 | ||| || |||||||| | ||||||||||||||| || || ||| ||||| Sbjct 28561 ATCAA-ATATTTGTTGACAATTGTAAATTCACCAGCAAGAACACGACGAGAGTACATGTT 28503 Query 109761 AGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGG 109820 | || | ||||| | | ||||||||||| || ||||||||||| |||||||| || Sbjct 28502 GGATGTAAATGGTTCAATTGATTCATTGTTGCCAAGAATTTGTGCAGTAGAAGCTGTTGG 28443 Query 109821 CATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGC 109880 ||| || || | | |||| || || | ||| | | || || || || ||| Sbjct 28442 CATTGGGGCAAGCAAAAGAGAATTGCGAATACCATGC----TTGGCCACTTGAGCTTTGA 28387 Query 109881 GT----CCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAA 109936 || |||| || || || | | || |||| ||||||||| ||| | Sbjct 28386 GTGTAGCCCAGTCCCAAAGATTTGT---TGGAGAAACACC---CCACATATCATATTGGA 28333 Query 109937 GTACACCCTCAGCAGCAGGAGAACCCTTGAAAC-TCTCGTACGACCCCTCAACCTCGGCC 109995 | ||| | ||||||| || | | || | ||||| | || | | ||| Sbjct 28332 AGATACCTTTGCTTACAGGAGAGCC-TGCATACGTTTCGTATGGACCAAATTCTTTGGCA 28274 Query 109996 AACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATG 110055 | || || | || | | ||||| || ||||| ||||| || ||| ||| | | Sbjct 28273 ATTTCCATGGATGTTTCCATGGATGCATGGTAAATAGTTTCAAAGATTTGAATATTGA-G 28215 Query 110056 AGGCGAGACT-CTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACC 110114 | | || | || | || || ||| ||| |||||||| |||| || || || Sbjct 28214 TTTCTTGGCTTCAGCAGATTCAAAAGGATAACCCATGAGAATAAAGGCATCAGCAAGCCC 28155 Query 110115 CTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGG 110174 |||||||| | |||||| || ||||| ||| || ||| ||| ||| | || Sbjct 28154 TTGAACACCAATACCAATAGGACGATGACGCATATTGCTTCGTTTAGCTTCTTCAATAGG 28095 Query 110175 GTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATG 110234 ||| ||||| || || || || | ||| || ||| | || ||||||| ||| Sbjct 28094 GTAGTAGTTGATTTCAATCACTTTGTTTAAATTGCGAGTAACAATTTTGGTGATTTTATG 28035 Query 110235 GAGTTTGTCGTAA--TCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATA 110292 | ||| |||| || || | | | | ||||||| |||| | |||||||| Sbjct 28034 CAAATTG--GTAAAGTCAAA-----TACAC-CATCATTGACAAATTTTGAAAGAGCAATC 27983 Query 110293 GACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACAC 110352 || || | ||||||||||| || |||||| || ||||| | || ||| ||| Sbjct 27982 GATGCCAAATTGCACACAGCCACTTCATCTTTGCTTGTATATTCGATAACTTCACAGCAC 27923 Query 110353 AAGTTGGAACTC---TTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCA 110409 ||||| |||| ||||| ||| ||||| | || ||||||||||| ||||| ||| Sbjct 27922 AAGTT---ACTCGATTTAATAGTACCTAAGTTTTGTTGGTTCGATTTGGAATTGCAAGCA 27866 Query 110410 TCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCAT 110469 || || || | ||| ||||| ||||||||||| | || || | ||||||||| |||| Sbjct 27865 TCTTTGTACAACATATATGGTGTACCAGTTTCGATTTGAGAATCGAGAATGGCAAACCAT 27806 Query 110470 ACATCGGCG-GCGGGGACAGTTGCGTT--AGCGAGACCTTCCTCCTCGTACTTGGTGTAC 110526 | || | | || || || | || ||| ||||||| || | ||||||||| Sbjct 27805 A-ATTGCTGAGCCTTGATTGT--CTTTCGAGCACGACCTTCAGATTCAAATTTGGTGTAC 27749 Query 110527 AAGTCCTCAAATTCCTGTCCGTACACATCA-GAAAGACCCTTCGCCTTGTCGGGACAGAA 110585 || | |||||||||| || | ||| | ||| || || | | || || || Sbjct 27748 AAAGCTTCAAATTCCTTGCCCCAGCAATCTTGCAAG-CCAGAAGCTTCATTTGGGCAAAA 27690 Query 110586 GAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGC 110645 || ||||| ||| | || || | |||||| |||| ||||| ||||||| || Sbjct 27689 AAGACTCCAATCACCATTTGCTTCGACACGCTTCATAAACAAATCAGGGATCCACAAGGC 27630 Query 110646 CGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAA 110705 | || || ||||| ||| ||||| || || || || |||||||| Sbjct 27629 ATAAAAGAGATCACGAGCACGGTGTAGTTCATTGCCATGATTTTTCTTGAGATCCAAAAA 27570 Query 110706 GTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACG 110762 || | ||||| | ||||||||||| ||||| | || | || |||||||| || Sbjct 27569 CTCAAAAATATCAGCATGCCATGGTTCAAGATACATGGCAAACGAACCCTTACGCTTACC 27510 Query 110763 ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCC 110822 ||| | |||| ||||||||| || || ||||||| || | ||||| ||||| || || Sbjct 27509 ACCACCTTGGTCAACATAGCGAGCGGTATCATTGAATACTCGAAGCATGGGAATGATACC 27450 Query 110823 ATCGGATTGACCATTTGTACCCCTAAT-TCTGGACTTATTGGCACGAATGTCGTGGATAT 110881 | ||| ||||| ||||| | ||| | | || ||| ||||| | |||||||| Sbjct 27449 GTTCGATGAGCCATTGGTACCACGAATATAACTATTTGTTGAG-CGAATATTGTGGATAT 27391 Query 110882 GCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAA 110941 || || |||||||| ||||| || ||| ||||| | | | | ||| |||||| Sbjct 27390 TCACGCCGATACCACCAGCCCATTTGGAAATACAAGCACATTGTTTCAAAGTATCATAAA 27331 Query 110942 TACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAG 111001 |||| ||||||||||| |||| |||| | ||||||||||| |||| || ||||| | Sbjct 27330 TACCTTCAATCGAATCGTCCTTCATGGCCAAAAGAAAGCAAGACGACAATTGTGGACGTG 27271 Query 111002 GCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGT 111061 | || || |||||||| || |||||||| ||||| |||| | ||| ||| | | Sbjct 27270 GAGTACCAGCATTGAAAAGAGTAGGTGTAGCATGGGTGAAGAACATTTGACTCATGTATT 27211 Query 111062 TGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGA 111121 || ||||| | || | | ||||| |||||||||| ||||| ||||||| Sbjct 27210 CATAAGTGTCCAAAGCTCCAGCAATATCTTCTTTATGAATACCAACAGCAACACGCATGA 27151 Query 111122 ACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTA 111181 ||| | ||||| ||| | ||||||| || | | | || ||||| || | Sbjct 27150 TCATGTGCTGAGGTCGTTCACAAACTTTTCCATTTACTTGAAGCAAATAGCTCTTTTCCA 27091 Query 111182 GGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATCTGA 111224 || || | |||||||| || | || ||||||||||| || Sbjct 27090 AAGTTTTAAATCCAAAGTAATCATATTCAAAATCACGATCAGA 27048 >seq1925 Length=14366 Score = 102 bits (112), Expect = 1e-16 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 167357 AACCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAA 167416 |||| |||||||||||||| |||| || | ||| |||| || | | |||||||||||| Sbjct 8040 AACCAGTACCAATACCTTCGTTACCATTGATCAATGCCATTGGGATAATTGGCATGTAAA 8099 Query 167417 AGTCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAGAATGGCATCATCT 167472 |||| |||||||| ||| |||| || || ||||||||||| | || ||||||| Sbjct 8100 AGTCAGGTTCAATCGAAAGACCTTCTTCTTCCAAGTAGTTCAAAACACTATCATCT 8155 >seq1768 Length=20761 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 168430 TTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACA 168489 || ||||| || |||||||| |||||| ||||||||| || || || || ||||| || Sbjct 2799 TTCCCACGCAGAGGAAATACACCATAAGTATCTCTACCAACAACAGAAAGCCCAGCCACT 2858 Query 168490 GCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGTGCC 168549 || || | ||| || |||||||| || || | ||| | ||| || | | | || |||| Sbjct 2859 GCAAGTGCTTTAGCCGAATCACCTTCAGTTAAGATCAATGTGCAATCTGCTGAACGTGCA 2918 Query 168550 GTACCAGCTTTGTTCGCATCGTCCAATTTGGGGA 168583 | ||||| || ||||| ||||||||||||| Sbjct 2919 CTGCCAGCCAAATTAGCATCCTCCAATTTGGGGA 2952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588936737387400