Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq224 293 3e-74 seq2584 113 5e-20 seq1925 89.7 6e-13 >seq224 Length=84125 Score = 293 bits (324), Expect = 3e-74 Identities = 977/1494 (65%), Gaps = 71/1494 (5%) Strand=Plus/Minus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 || ||||| | || | ||||||| ||||||| || || | |||||||| || || Sbjct 28510 TACATGTTGGATGTAAATGGTTCAATTGATTCATTGTTGCCAAGAATTTGTGCAGTAGAA 28451 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACC---CTTTTCC--TTGATGC 106049 |||||||||||||| || | ||||||| || |||| ||| ||| || |||| Sbjct 28450 GCTGTTGGCATTGGGGCAAGCAAAAGAGAATTGCGAATACCATGCTTGGCCACTTGAG-- 28393 Query 106050 GTTCCTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTCAC---CTTCCCACATATCAA 106106 | ||||| | ||||||| | || || ||| | | ||||||||||| Sbjct 28392 ---CTTTGAGTGTAGCCCAGTCCCAA---AGATTTGTTGGAGAAACACCCCACATATCAT 28339 Query 106107 ATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTT 106166 |||| | | |||| | ||||| || || | || || || | ||| ||| Sbjct 28338 ATTGGAAGATACCTTTGCTTACAGGAGAGCCTGCATACGTTTCGTATGGACCAAATTCTT 28279 Query 106167 CAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCAT 106226 || | ||| | | |||| |||||| || || || ||||||||||| || || Sbjct 28278 TGGCAATTTCCATGGATGTTTCCATGGATGCATGGTAAATAGTTTCAAAGATTTGAATAT 28219 Query 106227 TCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGA 106286 | | | |||||||||| | || ||||| | || | | |||||| |||| || | Sbjct 28218 TGAGTTTCTTGGCTTCAGCAGATTCAAAAGGATAACCCATGAGAATAAAGGCATCAGCAA 28159 Query 106287 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAG--TCT- 106343 | ||||||||||| | ||||||||| | || |||||||| |||| || ||| Sbjct 28158 GCCCTTGAACACCAATACCAATAGGACGATGACGCATATTGC---TTCGTTTAGCTTCTT 28102 Query 106344 CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGA 106403 ||| || || | || | ||||| ||| ||||| ||| |||||||| || |||| Sbjct 28101 CAATAGGGTAGTAGTTGATTTCAATCACTTTGTTTAAATTGCGAGTAACAATTTTGGTGA 28042 Query 106404 TTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGG 106463 ||| ||| | || | | ||||| | | ||||||||| | |||| ||| | Sbjct 28041 TTTTATGCAAATTGGTAAAGTCAAATACACCA------TCATTGACAAATTTTGAAAGAG 27988 Query 106464 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTG 106523 | || |||||||||||||| |||||| ||||| || ||| || || | || ||| Sbjct 27987 CAATCGATGCCAAATTGCACACAGCCACTTCATCTTTGCTTGTATATTCGATAACTTCAC 27928 Query 106524 TACACAAGTTGGAACTC---TTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG---T 106577 |||||||| |||| ||||| || || || || | |||||| | |||| | Sbjct 27927 AGCACAAGTT---ACTCGATTTAATAGTACCTAAGTTTTGTTGGTT---CGATTTGGAAT 27874 Query 106578 TGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTG 106637 |||| ||||| ||||| | ||| || || || || || || | || || | |||||| | Sbjct 27873 TGCAAGCATCTTTGTACAACATATATGGTGTACCAGTTTCGATTTGAGAATCGAGAATGG 27814 Query 106638 CCTTCCACACAT-CGGCGGCTGGTACAATGGCGTTGG--CCCGTCCCTCCGCCTCGTACT 106694 | ||| | | | | | || | | || | || | | || || || | || | | Sbjct 27813 CAAACCATAATTGCTGAGCCTTG---ATTGTCTTTCGAGCACGACCTTCAGATTCAAATT 27757 Query 106695 TTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGCCTTGTCT 106753 | ||||| | |||||||| |||| ||| | || || | || | || | | | Sbjct 27756 TGGTGTACAAAGCTTCAAATTCCTTGCCC-CAGCAATCTTGCAAGCCAGAAGCTTCATTT 27698 Query 106754 GGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATC 106813 || || |||||| ||| | |||| | || || |||||||| || | || || ||| Sbjct 27697 GGGCAAAAAAGACTCCAATCACCATTTGCTTCGACACGCTTCATAAACAAATCAGGGATC 27638 Query 106814 CACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA 106872 |||| || |||||||||| | | ||| | | ||| | || || || || | | Sbjct 27637 CACAAGGCATAAAAGAGATCACGAGCACGGTGTAG-TTCATTGCCATGATTTT-TCTTGA 27580 Query 106873 C-TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCT 106931 || | ||||| | ||||| || |||||||| |||||||| | || | || |||| Sbjct 27579 GATCCAAAAACTCAAAAATATCAGCATGCCATGGTTCAAGATACATGGCAAACGAACCCT 27520 Query 106932 TTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTG 106988 | || || ||| |||| | |||||||| || || | || ||||| |||||||| | Sbjct 27519 TACGCTTACCACCACCTTGGTCAACATAGCGAGCGGTATCATTGAATACTCGAAGCATGG 27460 Query 106989 GAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAG-ATTTATTGGCTCTCACA 107047 |||| ||||| | ||| ||||| || || |||||| | |||| ||| | | | Sbjct 27459 GAATGATACCGTTCGATGAGCCATTGGTACCACGAATATAACTATTTGTTGAG-CGAATA 27401 Query 107048 TCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGA 107107 | ||||| | || || ||||| |||||||| || || || ||||| | | | | Sbjct 27400 TTGTGGATATTCACGCCGATACCACCAGCCCATTTGGAAATACAAGCACATTGTTTCAAA 27341 Query 107108 GTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATC 107167 || |||| ||||| | || || || ||||| |||| | ||| |||||| |||| Sbjct 27340 GTATCATAAATACCTTCAATCGAATCGTCCTTCATGGCCAAAAGAAAGCAAGACGACAAT 27281 Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGT----TGCGTGAATGAACATACC 107223 || || | ||| |||||||||||||| || || ||||| || ||||| |||||| Sbjct 27280 TGTGGACGTGGAGTACCAGCATTGAAAAGAGTAGGTGTAGCATGGGTGAA-GAACAT--- 27225 Query 107224 TTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 107283 ||| ||| | || || || ||||| | | |||| ||||| || || || | Sbjct 27224 TTGACTCATGTATTCATAAGTGTCCAAAGCTCCAGCAATATCTTCTTTATGAATACCAAC 27165 Query 107284 GGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAG 107343 || |||||||| | ||||| || ||| ||| | | |||| | |||||| Sbjct 27164 AGCAACACGCATGATCATGTGCTGAGGTCGTTCACAAACTTTTCCATTTA---CTTGAAG 27108 Query 107344 ---ATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 ||||||||| || | ||||| | ||||||||| || | ||| | || || Sbjct 27107 CAAATAGCTCTTTTCCAAAGTTTTAAATCCAAAGTAATCATATTCAAAATCACG 27054 >seq2584 Length=5567 Score = 113 bits (124), Expect = 5e-20 Identities = 292/434 (67%), Gaps = 12/434 (3%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || ||||| || || ||||||||||| || | ||| || | ||||| Sbjct 2950 TATTCACCGACACGCTTTTCGAAAAAGTTGGTCTTTCCTTGAAGAGATATCATGTCCATC 3009 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGAGGAGACG 117104 |||| ||||||||||| || || ||| | ||| | | |||| || ||| || || Sbjct 3010 CAGTCGAATGGATTCTTGGCATTGTAAA-GCTTGGTAGCTCCAAGGGCTTGGAGAAGGCG 3068 Query 117105 ATCCGACACATACT-CAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGAT-TA 117162 ||| | |||| | | ||||||| ||| |||| ||||||||||| ||||| | || Sbjct 3069 ATCAG-CACAGAATTCAATGTATTCGCACATGAGAGATGAGTTCATACCAATGAGTTCTA 3127 Query 117163 CATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCG 117222 | ||| || | ||| ||| || || ||||| |||| || || | || | Sbjct 3128 C-TGGAAGAGATTCCGAGACAAATTGCTTTTCAATTGCAACAGCATCCCCAATAATTTCA 3186 Query 117223 TGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTC---CACGGCAAAC 117279 || ||| |||| ||| | | || | || | ||| | | || |||||| Sbjct 3187 TGAATACGTTCGTTAGAAAGCTTGTT--GATGAGCTTGGAATACATGAGGCA-GGCAAAG 3243 Query 117280 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATG 117339 || || ||||||||||| || ||||||||||| || || |||| || || ||||| Sbjct 3244 TCACAATGAAGACCCTCATCACGAGAAATAAGTTCGTTCGAAAAGCTTAAACCAGGCATC 3303 Query 117340 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 117399 | ||| || ||||| | |||| | || | ||| ||||| || || ||||| ||||| || Sbjct 3304 AAACCACGTTTCTTGAGCCAAAAGATCGAGCAAAATGATCCTGAAAAGAAAATACCTTCA 3363 Query 117400 ACACACGCAAACGC 117413 ||| ||||| || Sbjct 3364 ACAGCAGCAAAGGC 3377 >seq1925 Length=14366 Score = 89.7 bits (98), Expect = 6e-13 Identities = 239/360 (66%), Gaps = 8/360 (2%) Strand=Plus/Plus Query 168291 CCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAAAG 168350 || ||||| ||||||||| | ||||| | | ||||||| || |||||||||||||| Sbjct 8042 CCAGTACCAATACCTTCGTTACCATTGATCAATGCCATTGGGATAATTGGCATGTAAAAG 8101 Query 168351 TCTGGTTCAATTGAGCGCCCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCGAGGA 168410 || |||||||| || | || || || ||||||||||| | | ||||| ||| Sbjct 8102 TCAGGTTCAATCGAAAGACCTTCTTCTTCCAAGTAGTTCAAAACACTATCATCTAATGGA 8161 Query 168411 TCAAAGATCTTGCGAGCCTCTTTGGTAAGTTTTGTGAAAATGTACCTCG-TCTGAGAAGC 168469 | | | | || | | || | ||||||||| | || | | ||| | ||| Sbjct 8162 TGATACACAAGACGTGTCAAATTTTCCAATTTTGTGAACACATAACGAGCGCTG-GCAGC 8220 Query 168470 ATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAG-AAGGTTAA--T 168526 ||| |||||||| | ||| ||||||||||| ||| || ||| || |||| | Sbjct 8221 ATCTTTACCACCTTGTAAACGAGTACCAAATTGCCCATTAGGAGAAAGTAAATTTAAATT 8280 Query 168527 GTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACTTC 168586 |||| || || ||||| | ||||| || ||||| | ||| | |||| Sbjct 8281 GTTGCTT---CCAACATAGTCTTGTGCCATACCAATGATCGTCCCATGTAAACTTGCTTC 8337 Query 168587 ACCATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTC 168646 |||||| ||||| ||||| | || | ||| || | |||| ||| || || || ||||| Sbjct 8338 ACCATGATGGTATGCAGAGTGTTCAGAGACGTAACCAGCCAATTGAGCAACTTTGATTTC 8397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589941470404920