Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq2194 118 1e-21 >seq2194 Length=9614 Score = 118 bits (130), Expect = 1e-21 Identities = 343/516 (66%), Gaps = 14/516 (3%) Strand=Plus/Plus Query 154599 GATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTAT 154658 || ||||| || || | | || | || | ||||| ||| | || | || ||||| ||| Sbjct 3555 GAAATCACTGGTTTCGCTGCTGTTTCGTCGCAACCAAACTCTGGTGCCCAAGGTGAATAT 3614 Query 154659 GCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCA-GGAGATGATAAAAGAAATGT 154717 || || || || || || | | ||||| ||| | ||||| | | | | ||||| Sbjct 3615 GCTGGTCTTTTGGCTATTCGTTCGTACCAA-AAGTCTATTGGAGAAGGTCACCGCAATGT 3673 Query 154718 ATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGAT 154777 || | || |||| ||| || || || || || |||||||||||||||||||| || || Sbjct 3674 TTGCCTCATCCCAGTGTCGGCTCACGGTACCAACCCTGCTAGTGCTGTCATGGCTGGTAT 3733 Query 154778 GAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAA 154837 ||| || || | |||||||| |||| |||| ||| | ||| ||| | || | Sbjct 3734 GAAGGTCGTTGTTGTCAAGTCAGATGCCAATGGCAACGTTGACCGAGCTGATTTGGAAGA 3793 Query 154838 GAAAGCAATCATGAATACATTTGAACTGTCA-TGTATT-ATGATTACATACCCATCTACA 154895 || | | | | || | ||||| ||| || || ||||| || || |||||||| Sbjct 3794 AAAGGTCAAGAAGCATGCCCATGAAC--TCAGTGCCTTCATGATCACTTATCCATCTACC 3851 Query 154896 CATGGTGTATTTGAAACTAACATTA--GACA-GATATGTAAGATCGTTCATGACAATGGT 154952 |||||| || ||| | | | |||| ||| | | | | || ||| | ||| Sbjct 3852 TTTGGTGTCTTCGAAGAAGGCGTCAAGGACATGAT---TCAATTGATCCACGACCACGGT 3908 Query 154953 GGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGT 155012 || || || || | ||||| || || | || || || || | | | |||| || Sbjct 3909 GGCCAAGTTTACATGGATGGTGCCAACATGAACGCTCAAGT-TGCTTTGACCAACCCTGG 3967 Query 155013 GAGTA-TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGG 155071 || | ||| ||||||||||| || | ||||| || || || ||||| ||||| ||||| Sbjct 3968 CAGCATTGGAGCAGATGTATGCCACTTGAACTTGCACAAGACTTTCTGCATTCCCCATGG 4027 Query 155072 AGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGC 155107 ||||| ||||| || || ||| | || ||||| || Sbjct 4028 TGGTGGTGGTCCAGGTGTTGGTTCGATCGGTGTTGC 4063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579174188226720