Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq2194 118 1e-21 >seq2194 Length=9614 Score = 118 bits (130), Expect = 1e-21 Identities = 343/516 (66%), Gaps = 14/516 (3%) Strand=Plus/Plus Query 159274 GATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTAT 159333 || ||||| || || | | || | || | ||||| ||| | || | || ||||| ||| Sbjct 3555 GAAATCACTGGTTTCGCTGCTGTTTCGTCGCAACCAAACTCTGGTGCCCAAGGTGAATAT 3614 Query 159334 GCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCA-GGAGATGATAAAAGAAATGT 159392 || || || || || || | | ||||| ||| | ||||| | | | | ||||| Sbjct 3615 GCTGGTCTTTTGGCTATTCGTTCGTACCAA-AAGTCTATTGGAGAAGGTCACCGCAATGT 3673 Query 159393 ATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGAT 159452 || | || |||| ||| || || || || || ||||| || || ||||| || || Sbjct 3674 TTGCCTCATCCCAGTGTCGGCTCACGGTACCAACCCTGCTAGTGCTGTCATGGCTGGTAT 3733 Query 159453 GAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAA 159512 ||| || || | |||||||| |||| |||||||| | ||| ||| | || | Sbjct 3734 GAAGGTCGTTGTTGTCAAGTCAGATGCCAATGGCAACGTTGACCGAGCTGATTTGGAAGA 3793 Query 159513 GAAAGCAATCATGAATACATTTGAACTGTCA-TGTATT-ATGATTACATATCCATCTACA 159570 || | | | | || | |||||| || || || ||||| || ||||||||||| Sbjct 3794 AAAGGTCAAGAAGCATGCCCATGAACT--CAGTGCCTTCATGATCACTTATCCATCTACC 3851 Query 159571 CATGGTGTATTTGAAACAAACATCA--GACA-GATATGTAAGATTGTTC-ATGAGAATGG 159626 |||||| || ||| | | ||| |||| ||| | | |||| || | || | || Sbjct 3852 TTTGGTGTCTTCGAAGAAGGCGTCAAGGACATGAT---TCA-ATTGATCCACGACCACGG 3907 Query 159627 TGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATG 159686 ||| || || || | |||||||| || | || || || || | | | | || || | Sbjct 3908 TGGCCAAGTTTACATGGATGGTGCCAACATGAACGCTCAAGTTGCTTTGACCAACCCTGG 3967 Query 159687 TGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGG 159746 | ||| ||||||||||| || | ||||| || ||||| ||||| ||||| ||||| Sbjct 3968 CAGCATTGGAGCAGATGTATGCCACTTGAACTTGCACAAGACTTTCTGCATTCCCCATGG 4027 Query 159747 AGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGC 159782 ||||| ||||| || || ||| | || ||||| || Sbjct 4028 TGGTGGTGGTCCAGGTGTTGGTTCGATCGGTGTTGC 4063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588011999036880