Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq419 176 1e-38 seq5008 168 1e-36 seq2092 165 2e-35 seq580 163 6e-35 seq2232 152 1e-31 seq4831 95.1 3e-14 >seq419 Length=23932 Score = 176 bits (194), Expect = 1e-38 Identities = 157/197 (80%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || || ||||| |||||||| ||| | ||||| || ||||||||||| ||||| Sbjct 23254 GTAGATTCCTTTTGGATATTGTAGTCGCTCAAAGTTCGTCCGTCTTCGAGCTGTTTACCA 23195 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || |||||||| |||||||| ||||||||||||||||| || |||||||| ||||| || Sbjct 23194 GCAAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCCTTATCTTGAATCTTTTGTTTC 23135 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| || |||| |||||| ||| || ||||| || | |||||| || |||||||| Sbjct 23134 ACGTTGTCGATGGAGTCCGATGGTTCGACGTCAAGTGTGATCGTCTTACCGGTCAAAGTC 23075 Query 195124 TTTACGAACACTTGCAT 195140 || || || | |||||| Sbjct 23074 TTAACAAAGATTTGCAT 23058 Score = 174 bits (192), Expect = 3e-38 Identities = 161/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| || || ||||| || ||||| || ||| || | |||||||| || || Sbjct 23717 GTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCACTAAGGGTGCGGCCATCTTCAAGTTG 23658 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| || || || || |||||||| ||||||||||||||||| ||||||||||| || Sbjct 23657 TTTACCAGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTT 23598 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||| ||||||| ||||| ||| || || || |||| ||||| || || Sbjct 23597 TTGCTTGACGTTGTCAATGGAATCCGATGGTTCGACATCGAGAGTAATGGTCTTACCCGT 23538 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| | |||||| Sbjct 23537 CAATGTCTTCACGAAGATTTGCAT 23514 Score = 167 bits (184), Expect = 5e-36 Identities = 155/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||| || ||||| |||||||||||| || || | ||||||||||| ||||| || Sbjct 23026 GTGGATTCCTTTTGGATATTGTAATCGCTCAGGGTACGACCATCTTCGAGTTGCTTGCCA 22967 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || |||||||| |||||||| ||||||||||||||||| || |||||||| ||||||||| Sbjct 22966 GCAAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCCTTATCTTGAATCTTTTGCTTG 22907 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| ||||||| |||||| || || || || || | ||||| || || | || Sbjct 22906 ACGTTGTCAATGGAGTCCGATGGCTCAACATCGAGCGTGATTGTCTTCCCCGTGAGTGTC 22847 Query 195124 TTTACGAACACTTGCAT 195140 || || || | |||||| Sbjct 22846 TTGACAAAGATTTGCAT 22830 Score = 161 bits (178), Expect = 2e-34 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || || ||||| || ||||| ||| | ||| | ||||||||||| || ||||| Sbjct 23482 GTAGATTCCTTTTGGATGTTGTAGTCGCTTAAAGTACGGCCATCTTCGAGTTGTTTACCG 23423 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || || |||||||| ||||||||||||||||| |||||||| || ||||| || Sbjct 23422 GCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGGATCTTTTGTTTA 23363 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || ||||||| ||||||| ||| || ||||| || | |||||| || ||||| || Sbjct 23362 ACATTATCAATGGAGTCCGAAGGTTCGACGTCAAGTGTGATCGTCTTACCGGTCAACGTC 23303 Query 195124 TTTACGAACACTTGCAT 195140 ||||| || | |||||| Sbjct 23302 TTTACAAAAATTTGCAT 23286 Score = 150 bits (166), Expect = 4e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 || ||||| || ||||| ||| ||||| | ||||||||||| ||||| || || ||| Sbjct 23932 TCCTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCAAAG 23873 Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 || || |||||||| || || ||||||||||| |||||||| || ||||||||||| || Sbjct 23872 ATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTG 23813 Query 195070 TCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACG 195129 ||||| | |||||| ||| || || ||||||| || || || ||||| || || || Sbjct 23812 TCAATAGAATCCGAAGGTTCGACATCGAGGGTAATGGTTTTACCCGTCAATGTCTTGACA 23753 Query 195130 AACACTTGCAT 195140 || | |||||| Sbjct 23752 AAGATTTGCAT 23742 >seq5008 Length=14815 Score = 168 bits (186), Expect = 1e-36 Identities = 159/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| || |||||||| || ||||||||| | ||| | |||||||| || || Sbjct 6424 TGAAGAGTAGATTCTTTTTGGATGTTGTAATCGCTCAAAGTACGTCCATCTTCAAGTTGT 6365 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || ||||| ||||| | |||||||| ||||||||||||||||| ||||||||||| ||| Sbjct 6364 TTGCCTGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTT 6305 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||||| || ||||| | |||||| ||| || || | || | ||||| |||||| Sbjct 6304 TGCTTGACATTATCAATCGAATCCGAAGGTTCGACATCCAACGTGATGGTCTTGCCTGTC 6245 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | ||||| Sbjct 6244 AATGTCTTGACGAAGATCTGCAT 6222 >seq2092 Length=13256 Score = 165 bits (182), Expect = 2e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| | ||| || || ||||| || ||||||||| | ||| | ||||||||||| || Sbjct 11898 GTGCAAAGTCGATTCCTTTTGGATGTTGTAATCGCTCAAAGTGCGACCATCTTCGAGTTG 11839 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| | |||||||| ||||||||||||||||| |||||||||||||| Sbjct 11838 CTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATTTT 11779 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || ||||| | |||||| ||| || || | || | ||||| || || Sbjct 11778 TTGCTTGACATTATCAATCGAATCCGAAGGTTCGACATCCAATGTGATGGTCTTACCCGT 11719 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || |||||||| | ||||| Sbjct 11718 CAAGGTCTTTACGAAGATCTGCAT 11695 >seq580 Length=37562 Score = 163 bits (180), Expect = 6e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || || || ||||| || || || ||||| ||||| || |||| | ||||| Sbjct 8053 CAAGACTAGATGTAGAGTAGATTCCTTCTGAATGTTGTAGTCACTGAGAGAACGACCATC 8112 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 |||||| || || || || || || | |||||||| |||||||| |||||||||||||| Sbjct 8113 TTCGAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGATCTGGAGGGATGCCTTCTTTGTC 8172 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||| ||||| || || || ||||| | ||| ||| |||||| ||||| |||| || Sbjct 8173 TTGAATCTTTTGTTTCACATTATCAATTGAGTCTGAAGGTTCCACGTCAAGTGTAATAGT 8232 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| ||||| || || ||||| | |||||| Sbjct 8233 CTTTCCAGTCAATGTCTTGACGAAAATTTGCAT 8265 Score = 159 bits (176), Expect = 8e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| ||||| || |||||||| |||||||| ||||| | ||||||||||| || Sbjct 8291 TGAAGTGTGGATTCCTTTTGAATGTTGTAATCACTGAGAGTGCGGCCATCTTCGAGTTGT 8350 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || || || | |||||| |||||||| || |||||||| || ||||| || ||| Sbjct 8351 TTGCCAGCAAAAATCAATCGTTGCTGGTCTGGTGGGATGCCTTCCTTATCTTGGATCTTT 8410 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || ||||| ||||| | ||||||| ||| || || | |||| ||||| || ||| Sbjct 8411 TGTTTTACGTTATCAATCGAGTCCGAAGGTTCGACATCCAATGTAATTGTCTTGCCGGTC 8470 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || |||||||| | |||||| Sbjct 8471 AACGTCTTTACGAAAATTTGCAT 8493 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | ||| | || || || ||||| |||||||| || |||||| | ||||| Sbjct 8509 CAACACCAAGTGCAAGGTCGATTCCTTTTGGATATTGTAGTCACTAAGAGTACGTCCATC 8568 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | || || || || ||||| | |||||||| ||||||||||| ||||| ||||| Sbjct 8569 TTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTC 8628 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||||||||||||||||||| ||||| | ||||||| |||||| || | |||| || Sbjct 8629 TTGAATTTTTTGCTTGACGTTATCAATCGAGTCCGAAGGTTCCACGTCCAACGTAATTGT 8688 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| || | || || || || | |||||| Sbjct 8689 CTTTCCGGTGAGTGTCTTGACAAAGATTTGCAT 8721 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | ||| ||||| || || |||||||| ||||| || | || | || || Sbjct 7825 CAATACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCACTTAATGTACGACCGTC 7884 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| || || ||||| ||||| || | |||||||| || ||||| |||||||| ||||| Sbjct 7885 TTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCCGGAGGGATGCCTTCCTTGTC 7944 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| || ||||||||||| || ||||| | ||| || ||| || || | ||||| || Sbjct 7945 TTGGATCTTTTGCTTGACATTATCAATCGAGTCGGATGGTTCAACATCCAAGGTAATGGT 8004 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| ||||||||||| || || | |||||| Sbjct 8005 TTTTCCCGTCAAAGTTTTGACAAAGATTTGCAT 8037 >seq2232 Length=15861 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| | ||| || || |||||||| ||||||||| | ||| | ||||||||||| || Sbjct 599 GTGCAAAGTCGATTCCTTTTGAATGTTGTAATCGCTCAAAGTACGACCATCTTCGAGTTG 540 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| | |||||||| ||||||||||| ||||| ||||| || || || Sbjct 539 CTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTT 480 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||| ||||| | ||||||| || || || | || | ||||| || || Sbjct 479 TTGCTTGACGTTGTCAATCGAGTCCGAAGGCTCTACATCCAACGTGATGGTCTTGCCAGT 420 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| | ||||| Sbjct 419 CAATGTCTTGACGAAAATCTGCAT 396 >seq4831 Length=17254 Score = 95.1 bits (104), Expect = 3e-14 Identities = 97/124 (78%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCG-GCAAGAGTTCTCCCATCTT 194989 ||||||||| || || || ||| |||||||||| ||||| |||| |||| ||||||| Sbjct 11391 AACAAGGTGTAGCGTTGATTCTCTTTGAATATTATAATCCCGCAAT-GTTCGTCCATCTT 11449 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 | || || || || || || || ||||| ||| || ||||||||||||||||| |||| Sbjct 11450 CTAGTTGTTTGCCAGCAAATATGAGTCGCATTTGATCAGGAGGAATGCCTTCTTTTTCTT 11509 Query 195050 GAAT 195053 | || Sbjct 11510 GGAT 11513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109405790162411