Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2584 275 7e-69 seq224 250 3e-61 >seq2584 Length=5567 Score = 275 bits (304), Expect = 7e-69 Identities = 441/627 (70%), Gaps = 10/627 (2%) Strand=Plus/Plus Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012 |||| | || ||||| |||||||| || ||||| || | | || | ||| || |||| Sbjct 3227 ACATGAGGCAGGCAAAGTCACAATGAAGACCCTCATCACGAGAAATAAGTTCGTTCGAAA 3286 Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAG 19072 | ||||||||||||||| || | ||| || | ||| || || || ||||||||| | Sbjct 3287 AGCTTAAACCAGGCATCAAACCACGTTTCTTGAGCCAAAAGATCGAGCAAAATGATCCTG 3346 Query 19073 AAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCAT 19132 ||||||| |||||||| || || ||||| || || | | |||| |||| |||| | Sbjct 3347 AAAAGAAAATACCTTCAACAGCAGCAAAGGCTACAATACGTTCTGCATACGCAGCAATTT 3406 Query 19133 TATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTA 19192 | || |||||| || ||||| | ||| || || |||||| || || || || | Sbjct 3407 TGCCATTGCACCATTTAAGAGCCCATTTAGCTTTACGTTGTACACAAGGAATCGTATCAA 3466 Query 19193 TAGAATTAAATA---GATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATA 19249 ||| | || | ||| | | || | || || | ||| | ||| || | | Sbjct 3467 TAGCCCTCAAAACACGATCTTTTTCCACAA---TGTCCTTGATATAAGTATCAATGAGCA 3523 Query 19250 AACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTG 19309 | || | |||||||||||||||||| ||||| || |||||||| ||||||||||| | Sbjct 3524 ACGAATAAACTTCTGAATGAATATTTTCGATAGCAATTTGAAATCCATAAAAACATCTAG 3583 Query 19310 CTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCAT 19369 |||| | || ||||||||| | |||| | | ||||||||||||| || || |||| Sbjct 3584 CTTCAGGTACTTGTACTTCATTGGAAAAATTCATGGCCAAATTTTCATTTACAATACCAT 3643 Query 19370 CACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATG 19429 | |||||||||||||| |||||||| ||||||| | ||||| || | | Sbjct 3644 CCGATGCTGCAAAAAATGCCAATACATGGGTAATAAAGAATCGTTCATTGTCCGTAAGTT 3703 Query 19430 TATTCCAATCATTAATATCTTTAGATAA-ATCTACTTCTTCAACTGTCCAAAAAGAAGCC 19488 | ||||||| || ||||| | || || ||||| |||||| | ||||||||| ||| Sbjct 3704 TTGTCCAATCTTTCATATC-ATGGACAAGATCTAATTCTTCTGCAGTCCAAAAACTAGCT 3762 Query 19489 TCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTA 19548 || ||||| |||||||| | ||| | ||| | ||| |||||||| | ||||||| | Sbjct 3763 TCAGCTTTCTTATACATTTCCCACACATCTGTGTGTTGAATAGGAAAAAGCACAAATCGA 3822 Query 19549 TTTTTATTTT-CTTTAAGAATAGGTTC 19574 ||| |||| | ||||||| ||||| Sbjct 3823 TTTGGGTTTTCCGATAAGAAT-GGTTC 3848 >seq224 Length=84125 Score = 250 bits (276), Expect = 3e-61 Identities = 1173/1847 (64%), Gaps = 65/1847 (4%) Strand=Plus/Minus Query 47016 CGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTT 47075 |||| || ||||| || ||||| | || |||| | || |||||||| | || | Sbjct 28855 CGTAGGTAGTACATGCCTGTCTTAAGTCCACGTTTCCAAGCGTAAAAATGCAT-CGAGGT 28797 Query 47076 AATTTAGAATA-ACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAA 47134 | || | | ||| || || | |||||| | ||| | ||||| ||| ||||| Sbjct 28796 GAGTTTGCTCACACTTGGATCGGCAATATGGACATTCATCGATTGCGATTGACAGATAAA 28737 Query 47135 TGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTT 47194 |||||| | |||||| || | ||||||||||| | |||| | ||||||||||| || Sbjct 28736 TGCACCACGATCAGCAGCAAGATCTAAAATAATCTTTTGCTTAACTTCCCATACTGTCTT 28677 Query 47195 ATAAATTTGTTTAATGTCTTCTGGGAGA-TTAGTA--TTTTGAATAGATCCTCCgttttc 47251 ||||| | ||| || || ||| | | ||| || ||||||| | || | | | Sbjct 28676 GTAAATGTCTTTGATACGTTTTGGAATACTTAATACGTTTTGAACACTACCACGATCATG 28617 Query 47252 tataattttgttttttaattcatttgaccaaagttttcgttcagtta-atgttttta--- 47307 || ||||| || || |||| |||||| | || || | ||| || Sbjct 28616 TAAAATTTGATTACGTACTTCAGCATTCCAAAGA---CCCAAAGATATAAGTTCTTTCAT 28560 Query 47308 -aAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTA 47366 ||| || | || |||||| |||||| |||| || || | ||| || || || Sbjct 28559 CAAATATTTG--TTGACAATTGTAAATTCACCAGCAAGAACACGACGAGAGTACATGTTG 28502 Query 47367 CTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGC 47426 |||| ||||||| || |||||||| || |||| |||||| ||||| || ||||| ||| Sbjct 28501 GATGTAAATGGTTCAATTGATTCATTGTTGCCAAGAATTTGTGCAGTAGAAGCTGTTGGC 28442 Query 47427 ATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGT 47486 || | |||| || | ||| | | |||| || | || || Sbjct 28441 ATTGGGGCAAGCAAAAGAGAATTGCGAATACCATGCTTGGCCA-CTTGAGCTTTGAGTGT 28383 Query 47487 TTCCAA-TCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTT 47545 || | |||||||||| || |||| |||| ||| | ||||||||| | || ||||| Sbjct 28382 AGCCCAGTCCCAAAGATTTGTTGGAGAAACACCCCACATATCATATTGGAAGATACCTTT 28323 Query 47546 ACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACT 47605 |||| ||||| || ||| |||| || ||||| || ||| || | ||| Sbjct 28322 GCTTACAGGAGAGCCTGCATACGTTTCGTATGGACCAAATTCTTTGGCAATTTCCATGGA 28263 Query 47606 TGCTTCCA---ATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGC 47662 || ||||| ||||| ||| || |||||||| |||| || || || ||| | || Sbjct 28262 TGTTTCCATGGATGCATGGTAA---ATAGTTTCAAAGATTTGAATATTGAGTTTCTTGGC 28206 Query 47663 TTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACC 47722 ||| | |||||||||||||| || | ||| || | ||||||||||| Sbjct 28205 TTCAGCAGATTCAAAAGGATAACCCATGAGAATAAAGGCATCAGCAAGCCCTTGAACACC 28146 Query 47723 AATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTT 47782 ||||||||| || | |||| |||| | ||||||| | || || | ||| Sbjct 28145 AATACCAATAGGACGATGACGCATATTGCTTCGTTTAGCTTCTTCAATAGGGTAGTAGTT 28086 Query 47783 TATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTAT- 47841 || || || | ||| |||| | ||||||| | | ||||| Sbjct 28085 GATTTCAATCACTTTGTTTAAA---------TTGCGAGTAACAATTTTGGTGATTTTATG 28035 Query 47842 --------TAAAATCAAACTTGTTATTTATAACAAACCTATTAAGTGCTATAGATGCTAG 47893 |||| ||||| || | ||||| | ||| || || ||||| | Sbjct 28034 CAAATTGGTAAAGTCAAATACACCATCATTGACAAATTTTGAAAGAGCAATCGATGCCAA 27975 Query 47894 ATTACATACAGCTACCTCAT-TTGGATTAGTATATTGTATTATTT--CAGCACATAGATT 47950 ||| || ||||| || |||| || | || ||||||| || | || ||||||| || || Sbjct 27974 ATTGCACACAGCCACTTCATCTTTGCTT-GTATATTCGATAACTTCACAGCACA-AG-TT 27918 Query 47951 ACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTACATGCGTCCTTG 48008 || |||| |||||||| || ||||| || || ||| || || || || ||| Sbjct 27917 ACTCGATTTAATAGTACCTAAGTTTTGTTGGTTCGATTTGGA--ATTGCAAGCATCTTTG 27860 Query 48009 TAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTC 48068 || | |||| | ||||| |||||||| || ||||| || | || | ||| | | | Sbjct 27859 TACAACATATATGGTGTACCAGTTTCGATTTGAGAATCGAGAATGGCAAACCATA-ATTG 27801 Query 48069 CT-AGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTC 48127 || |||||| || || ||| | ||| ||| |||| || || || || Sbjct 27800 CTGAGCCTTGATTGTCTTTCGAGCACGACCTTCAGATTCAAATTTGGTGTACAAAGCTTC 27741 Query 48128 AAATTCAT--CCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA- 48184 |||||| | ||||| || || | || |||| | |||||| || || | || || Sbjct 27740 AAATTCCTTGCCCCA-GCA-ATCTTGCAAGCCAGAAGCTTCATTTGGGCAAA--AAAGAC 27685 Query 48185 -CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAA 48243 |||||| ||| || || | ||||||| | ||| || ||||| | || || Sbjct 27684 TCCAATCACCATTTGCTTCGACACGCTTCATAAACAAATCAGGGATCCACAAGGCATAAA 27625 Query 48244 ATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCA 48303 | | ||| | || | || |||||||||| ||| | || || || | ||| || | Sbjct 27624 AGAGATCACGAGCACGGTGTAGTTCATTGCCATGATTTTTCTTGAGATCCAAAAACTCAA 27565 Query 48304 TTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTC 48363 |||||||||||||||||||| | ||| || || | ||| || ||| ||| | Sbjct 27564 AAATATCAGCATGCCATGGTTCAAGATACATGGCAAACGAACCCTTACGCTTACCACCAC 27505 Query 48364 CTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTG 48423 |||| || | ||| | || |||| || | |||| | ||| || | ||||| || | Sbjct 27504 CTTGGTCAACATAGCGAGCGGTATCATTGAATACTCGAAGCATGGGAATGATACCGTTCG 27445 Query 48424 ATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATAC 48483 || |||||||| || ||||||||| | | | ||||| || | | Sbjct 27444 ATGAGCCATTGGTACCACGAATATAACTATTTGTTGAGCGAATATTGTGGATATTCACGC 27385 Query 48484 CTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTT 48543 | |||||||| ||| ||| || || |||||| |||| | ||||||||||| |||| Sbjct 27384 CGATACCACCAGCCCATTTGGAAATACAAGCACATTGTTTCAAAGTATCATAAATACCTT 27325 Query 48544 CTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTC 48603 | || ||| || |||| || ||||| ||| |||| ||| ||| | ||| | Sbjct 27324 CAATCGAATCGTCCTTCATGGCCAAAAGAAAGCAAGACGACAATTGTGGACGTGGAGTAC 27265 Query 48604 CTGAATTAAATAATGTTGGAGATGCATGAAT--AAACCATTTCTCTGATAACAATTTATA 48661 | | ||| || | || || | ||||| | | | ||||| || || ||| ||| Sbjct 27264 CAGCATTGAAAAGAGTAGGTGTAGCATGGGTGAAGAACATTTGACTCAT--GTATTCATA 27207 Query 48662 TGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACAT 48721 || || | | | | | ||||| || ||| ||||| | || |||||||| | ||| Sbjct 27206 AGTGTCCAAAGCTCCAGCAATATCTTCTTTATGAATACCAACAGCAACACGCATGATCAT 27147 Query 48722 ATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGT 48781 | ||||||| |||| || ||| ||||| || | | ||| |||||||| || Sbjct 27146 GTGCTGAGGTCGTTCACAAACTTTTCCATTTACTTGAAGCAAATAGCTCTTTTCCAAAGT 27087 Query 48782 TTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTG 48828 |||||| ||||| || | ||| ||| || |||| |||||||| Sbjct 27086 TTTAAATCCAAAGTAATCATATTCAAAATCACGATCAGAAATAATTG 27040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562071328422120