Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2584 268 1e-66 >seq2584 Length=5567 Score = 268 bits (296), Expect = 1e-66 Identities = 592/880 (67%), Gaps = 12/880 (1%) Strand=Plus/Plus Query 36891 TATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTCCATA 36950 ||||| || || || |||||||||| || |||||||||| || ||||| | ||||| Sbjct 2950 TATTCACCGACACGCTTTTCGAAAAAGTTGGTCTTTCCTTGAAGAGATATCATGTCCATC 3009 Query 36951 AAATCAAATGGATTAGATGTATTATATA---TAGTA-CTACATGATAATTCCTTCAGAAG 37006 | || |||||||| | ||| || | | ||| || || | | | ||||| Sbjct 3010 CAGTCGAATGGATTCTTGGCATTGTAAAGCTTGGTAGCTCCAAGGG----CTTGGAGAAG 3065 Query 37007 CCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTT 37066 | ||| ||| ||||| ||||||| ||||| || |||| |||||||| |||| Sbjct 3066 GCGATCAGCACAGAATTCAATGTATTCGCACATGAGAGATGAGTTCATACCAATGAGTTC 3125 Query 37067 TACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATT 37126 |||||||| | || | |||| | ||||| ||| |||||||| || || | Sbjct 3126 TACTGGAAGAGATTCCGAGACAAATTGCTTTTCAATTGCAACAGCATCCCCAATAATTTC 3185 Query 37127 AACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCAAAATC 37186 | |||| ||| | || | | | | | | ||| | || ||||| || Sbjct 3186 ATGAATACGTTCGTTAGAAAGCTTGTTGATGAGCTTGGAATACATGAGGCAGGCAAAGTC 3245 Query 37187 ACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAA 37246 |||||| | ||| ||||| | | || | ||| || |||||| |||| || ||||| || Sbjct 3246 ACAATGAAGACCCTCATCACGAGAAATAAGTTCGTTCGAAAAGCTTAAACCAGGCATCAA 3305 Query 37247 ACCTCtttttttAATCCAAAATATTGCTGCAAAA-GATCCAGAAAAGAAAATACCTTCAA 37305 ||| | ||| || | |||||| || | |||||| ||||| ||||||||||||||||||| Sbjct 3306 ACCACGTTTCTTGAGCCAAAAGATCGA-GCAAAATGATCCTGAAAAGAAAATACCTTCAA 3364 Query 37306 CTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAttttt 37365 | || ||||| ||||||| |||| | | | | | | | || |||||| Sbjct 3365 CAGCAGCAAAGGCTACAATACGTTCTGCATACGCAGCAATTTTGCCATTGCACCATTTAA 3424 Query 37366 ttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGt 37425 | ||| | || || || ||||| ||| || ||||| || | || | | | Sbjct 3425 GAGCCCATTTAGCTTTACGTTGTACACAAGGAATCGTATCAATAGCCCTCAAAACACGAT 3484 Query 37426 ttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAA 37485 |||||| || | || | |||||||||||||| || || ||| | ||| || |||| Sbjct 3485 CTTTTTCCACAATGTCCTTGATATAAGTATCAATGAGCAACGAATAAACTTCTGAATGAA 3544 Query 37486 TATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGT 37545 ||||||| ||||| || ||||| ||||||||||| |||||||||| || ||| || || | Sbjct 3545 TATTTTCGATAGCAATTTGAAATCCATAAAAACATCTAGCTTCAGGTACTTGTACTTCAT 3604 Query 37546 TAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAA 37605 | |||| || | || || |||||||| || || ||||| |||||||| || || | Sbjct 3605 TGGAAAAATTCATGGCCAAATTTTCATTTACAATACCATCCGATGCTGCAAAAAATGCCA 3664 Query 37606 GAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTT 37665 |||| | ||||| || ||||| | | | |||| ||||||| || ||||| Sbjct 3665 ATACATGGGTAATAAAGAATCGTTCATTGTCCGTAAGTTTTGTCCAATCTTTCATATC-A 3723 Query 37666 TTGATAA-ATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACGTTTATACATCGTC 37724 | || || ||| | ||| || | ||||||||||| || || |||||||| | Sbjct 3724 TGGACAAGATCTAATTCTTCTGCAGTCCAAAAACTAGCTTCAGCTTTCTTATACATTTCC 3783 Query 37725 CAAATATCATTATGTTGTATTGGAAATATTACAAATCTAT 37764 || | ||| | ||||| || ||||| | ||||||| || Sbjct 3784 CACACATCTGTGTGTTGAATAGGAAAAAGCACAAATCGAT 3823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592277314681320