Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq419 152 4e-32 seq5008 147 2e-30 seq580 141 7e-29 seq2092 132 4e-26 >seq419 Length=23932 Score = 152 bits (168), Expect = 4e-32 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||| | || ||||| | |||||||| ||||| |||||||| ||| | ||||| Sbjct 23275 AAACGGAGGACCAAATGCAATGTAGATTCCTTTTGGATATTGTAGTCGCTCAAAGTTCGT 23216 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 | || || | || ||||| ||||| || | ||| |||||||| || ||||||||||| Sbjct 23215 CCGTCTTCGAGCTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCC 23156 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 ||||||||||| |||||||| || | || | | ||| || | ||| || ||||| ||| Sbjct 23155 TTATCTTGAATCTTTTGTTTCACGTTGTCGATGGAGTCCGATGGTTCGACGTCAAGTGTG 23096 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 | ||| || ||||| ||||| || ||||| || |||||| Sbjct 23095 ATCGTCTTACCGGTCAAAGTCTTAACAAAGATTTGCATG 23057 Score = 149 bits (164), Expect = 5e-31 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || ||||| | |||||||| ||||| || ||||| ||| | ||| | | | Sbjct 23501 ACGCAAGACCAAATGCAATGTAGATTCCTTTTGGATGTTGTAGTCGCTTAAAGTACGGCC 23442 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | ||| ||||| ||||| || | || |||||||| || ||||||||||| || Sbjct 23441 ATCTTCGAGTTGTTTACCGGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCTT 23382 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| || |||||||| ||| | || | | ||| || | ||| || ||||| |||| Sbjct 23381 GTCTTGGATCTTTTGTTTAACATTATCAATGGAGTCCGAAGGTTCGACGTCAAGTGTGAT 23322 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||| || ||||| || || |||||||| || |||||| Sbjct 23321 CGTCTTACCGGTCAACGTCTTTACAAAAATTTGCATG 23285 Score = 131 bits (144), Expect = 1e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||| | ||| ||||| | || ||||| ||||| |||||||||||| | || | Sbjct 23047 AAACGAAGAACCAAATGCAATGTGGATTCCTTTTGGATATTGTAATCGCTCAGGGTACGA 22988 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 |||| || | |||||| || ||||| || | ||| |||||||| || ||||||||||| Sbjct 22987 CCATCTTCGAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCC 22928 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 ||||||||||| ||||| || || | || | | ||| || | || || || || ||| Sbjct 22927 TTATCTTGAATCTTTTGCTTGACGTTGTCAATGGAGTCCGATGGCTCAACATCGAGCGTG 22868 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 | || || || || | || || ||||| || ||||||||| Sbjct 22867 ATTGTCTTCCCCGTGAGTGTCTTGACAAAGATTTGCATGGTT 22826 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 101279 TCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAAT 101338 || ||||| || ||||| ||| || ||| | | |||| || | |||||| || ||||| Sbjct 23932 TCCTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCAAAG 23873 Query 101339 ATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATT 101398 || | ||| |||||||| || ||||||||||| || ||||| || ||||| || ||| | Sbjct 23872 ATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTG 23813 Query 101399 TCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACA 101458 || | || || || | ||| || || || || | ||||| || || || || || ||| Sbjct 23812 TCAATAGAATCCGAAGGTTCGACATCGAGGGTAATGGTTTTACCCGTCAATGTCTTGACA 23753 Query 101459 AATATCTGCATG 101470 || || |||||| Sbjct 23752 AAGATTTGCATG 23741 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||| | || || ||||| || ||||| ||||| || ||||| || | || | | Sbjct 23731 AAACGAAGGACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCACTAAGGGTGCGG 23672 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 |||| || | ||| ||||| ||||| || | || |||||||| || ||||||||||| Sbjct 23671 CCATCTTCAAGTTGTTTACCAGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCC 23612 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 || |||||||| ||||| || || | || | | || || | ||| || || ||||| Sbjct 23611 TTGTCTTGAATCTTTTGCTTGACGTTGTCAATGGAATCCGATGGTTCGACATCGAGAGTA 23552 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || || || || || || || || || || ||||| Sbjct 23551 ATGGTCTTACCCGTCAATGTCTTCACGAAGATTTGCAT 23514 >seq5008 Length=14815 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || |||||||| |||||||||||||| || ||||||||| | ||| | |||| || Sbjct 6430 ACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCGCTCAAAGTACGTCCATCTTCA 6371 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||| || |||||||| |||||||| |||||||| || ||||||||||| || |||||| Sbjct 6370 AGTTGTTTGCCTGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGA 6311 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||||| || ||| | || | | || || | ||| || || | |||| || ||| Sbjct 6310 ATCTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGACATCCAACGTGATGGTCTTG 6251 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || || || || |||||||| Sbjct 6250 CCTGTCAATGTCTTGACGAAGATCTGCAT 6222 >seq580 Length=37562 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| |||||| || || || || | ||| ||||| ||||| |||||||| || Sbjct 8495 CCGCCTCGTAAACGCAACACCAAGTGCAAGGTCGATTCCTTTTGGATATTGTAGTCACTA 8554 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| |||||||| || || ||||| |||||||| |||||||| || ||| Sbjct 8555 AGAGTACGTCCATCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 8614 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || |||||||||||||| || || | || | | ||| || | |||||| Sbjct 8615 ATACCTTCCTTGTCTTGAATTTTTTGCTTGACGTTATCAATCGAGTCCGAAGGTTCCACG 8674 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || | || | || || ||||| | || || ||||| || |||||| Sbjct 8675 TCCAACGTAATTGTCTTTCCGGTGAGTGTCTTGACAAAGATTTGCATG 8722 Score = 136 bits (150), Expect = 3e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||||| || |||||||| || ||||| ||||| || |||||||| || ||| | | Sbjct 8276 AAACGTAGGACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCACTGAGAGTGCGG 8335 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 |||| || | ||| || || ||||| ||||| || || || || || || |||||||| Sbjct 8336 CCATCTTCGAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGGTCTGGTGGGATGCCTTCC 8395 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 |||||||| || ||||||||||| | || | | ||| || | ||| || || | || Sbjct 8396 TTATCTTGGATCTTTTGTTTTACGTTATCAATCGAGTCCGAAGGTTCGACATCCAATGTA 8455 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || |||||||| || || ||||| || || ||||| Sbjct 8456 ATTGTCTTGCCGGTCAACGTCTTTACGAAAATTTGCAT 8493 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | |||||| || |||| ||| || |||||||| || || || ||||| || | Sbjct 8039 CCACCACGTAAACGCAAGACTAGATGTAGAGTAGATTCCTTCTGAATGTTGTAGTCACTG 8098 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | ||| || || ||||| || ||||| |||||||| || || Sbjct 8099 AGAGAACGACCATCTTCGAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGATCTGGAGGG 8158 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| |||||||| |||||||| ||| | || | | ||| || | |||||| Sbjct 8159 ATGCCTTCTTTGTCTTGAATCTTTTGTTTCACATTATCAATTGAGTCTGAAGGTTCCACG 8218 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || | || || || || || || || || || || ||||| Sbjct 8219 TCAAGTGTAATAGTCTTTCCAGTCAATGTCTTGACGAAAATTTGCAT 8265 >seq2092 Length=13256 Score = 132 bits (146), Expect = 4e-26 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || ||||| ||||| || ||||||||| | ||| | |||| || | |||||| || Sbjct 11891 GTCGATTCCTTTTGGATGTTGTAATCGCTCAAAGTGCGACCATCTTCGAGTTGCTTGCCG 11832 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| |||||||| |||||||| || ||||||||||| || |||||||||||||| || Sbjct 11831 GCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATTTTTTGCTTG 11772 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||| | || | | || || | ||| || || | |||| || || || || || || Sbjct 11771 ACATTATCAATCGAATCCGAAGGTTCGACATCCAATGTGATGGTCTTACCCGTCAAGGTC 11712 Query 101453 TTTACAAATATCTGCATGGTT 101473 ||||| || |||||||| ||| Sbjct 11711 TTTACGAAGATCTGCATCGTT 11691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396252643513881