Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq580 123 2e-23 seq419 105 5e-18 seq2092 102 6e-17 seq2232 93.3 3e-14 >seq580 Length=37562 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || || || |||||||| ||||| ||| || | ||| Sbjct 7820 AGACGCAATACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCACTTAATGTACGA 7879 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | || ||||| || || |||| || |||||||||| || | ||| ||| Sbjct 7880 CCGTCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCCGGAGGGATGCCTTCC 7939 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||||| || ||| | | | || || || | || || |||| ||| Sbjct 7940 TTGTCTTGGATCTTTTGCTTGACATTATCAATCGAGTCGGATGGTTCAACATCCAAGGTA 7999 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||||||||||||||| ||||| || ||||| Sbjct 8000 ATGGTTTTTCCCGTCAAAGTTTTGACAAAGATTTGCAT 8037 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || ||||||||||| || | || || ||||| |||||||| ||| Sbjct 8495 CCGCCTCGTAAACGCAACACCAAGTGCAAGGTCGATTCCTTTTGGATATTGTAGTCACTA 8554 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || ||||| || || || ||||| |||| || |||||||| | ||| Sbjct 8555 AGAGTACGTCCATCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 8614 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||| ||||| || || | | | || || || | ||||| Sbjct 8615 ATACCTTCCTTGTCTTGAATTTTTTGCTTGACGTTATCAATCGAGTCCGAAGGTTCCACG 8674 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| |||||| || ||||| || | || || ||||| || ||||| Sbjct 8675 TCCAACGTAATTGTCTTTCCGGTGAGTGTCTTGACAAAGATTTGCAT 8721 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || ||| || |||||||| ||||||||| ||| | || | || || Sbjct 8285 ACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCACTGAGAGTGCGGCCATCTTCG 8344 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | || || || ||||| |||| ||| || || || | || | ||| ||||| || Sbjct 8345 AGTTGTTTGCCAGCAAAAATCAATCGTTGCTGGTCTGGTGGGATGCCTTCCTTATCTTGG 8404 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||||||||||| | | | || || || | || || |||| ||||| || || Sbjct 8405 ATCTTTTGTTTTACGTTATCAATCGAGTCCGAAGGTTCGACATCCAATGTAATTGTCTTG 8464 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || ||||| || ||||| ||||| |||||| Sbjct 8465 CCGGTCAACGTCTTTACGAAAATTTGCATC 8494 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 ||||| || | |||||| || || || ||||| ||||| ||| ||| ||| | Sbjct 8051 CGCAAGACTAGATGTAGAGTAGATTCCTTCTGAATGTTGTAGTCACTGAGAGAACGACCA 8110 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || | || || || ||||| || | || |||||||| | || | ||| || ||| Sbjct 8111 TCTTCGAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGATCTGGAGGGATGCCTTCTTTG 8170 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || |||||||||||| ||| | | | || ||||| | ||||| || | ||||| Sbjct 8171 TCTTGAATCTTTTGTTTCACATTATCAATTGAGTCTGAAGGTTCCACGTCAAGTGTAATA 8230 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||| || || || ||||| ||||| Sbjct 8231 GTCTTTCCAGTCAATGTCTTGACGAAAATTTGCAT 8265 >seq419 Length=23932 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||||||| | || || ||||| || ||||| || || | | || Sbjct 23503 AGACGCAAGACCAAATGCAATGTAGATTCCTTTTGGATGTTGTAGTCGCTTAAAGTACGG 23444 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | || ||||||||||| || || || |||||||| | |||| ||| ||| Sbjct 23443 CCATCTTCGAGTTGTTTACCGGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCC 23384 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||||||| ||| | | | || || || | || || || | || Sbjct 23383 TTGTCTTGGATCTTTTGTTTAACATTATCAATGGAGTCCGAAGGTTCGACGTCAAGTGTG 23324 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || ||||| || ||||||||||| ||||| Sbjct 23323 ATCGTCTTACCGGTCAACGTCTTTACAAAAATTTGCAT 23286 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| | || || ||||| |||||||| || | | |||| |||| || Sbjct 23266 ACCAAATGCAATGTAGATTCCTTTTGGATATTGTAGTCGCTCAAAGTTCGTCCGTCTTCG 23207 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||| ||||| ||||| || || || |||||||| | |||| ||| ||||| || | Sbjct 23206 AGCTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCCTTATCTTGA 23147 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||||||||| || | | || || || | || || || | || ||||| || Sbjct 23146 ATCTTTTGTTTCACGTTGTCGATGGAGTCCGATGGTTCGACGTCAAGTGTGATCGTCTTA 23087 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || ||||| || ||||| Sbjct 23086 CCGGTCAAAGTCTTAACAAAGATTTGCAT 23058 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| | ||| || ||||| ||||||||||| || | ||| | || || Sbjct 23038 ACCAAATGCAATGTGGATTCCTTTTGGATATTGTAATCGCTCAGGGTACGACCATCTTCG 22979 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| || ||||| || || || |||||||| | |||| ||| ||||| || | Sbjct 22978 AGTTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCCTTATCTTGA 22919 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||||| || || | | || || || | ||| || || | ||| || || || Sbjct 22918 ATCTTTTGCTTGACGTTGTCAATGGAGTCCGATGGCTCAACATCGAGCGTGATTGTCTTC 22859 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 ||||| | || || ||||| || ||||| || Sbjct 22858 CCCGTGAGTGTCTTGACAAAGATTTGCATGGT 22827 >seq2092 Length=13256 Score = 102 bits (112), Expect = 6e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||| || |||||||| | | | ||| | || || | ||||| |||||||| Sbjct 11885 TCCTTTTGGATGTTGTAATCGCTCAAAGTGCGACCATCTTCGAGTTGCTTGCCGGCAAAG 11826 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || |||||||| | |||| ||| |||||||| ||| ||||| || ||| | Sbjct 11825 ATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATTTTTTGCTTGACATTA 11766 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || | || || |||| || || || || |||||||| || ||||| Sbjct 11765 TCAATCGAATCCGAAGGTTCGACATCCAATGTGATGGTCTTACCCGTCAAGGTCTTTACG 11706 Query 48756 AAAATCTGCATCGT 48769 || ||||||||||| Sbjct 11705 AAGATCTGCATCGT 11692 >seq2232 Length=15861 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || |||||||| |||||||| | | | ||| | || || | ||||| |||||||| Sbjct 586 TCCTTTTGAATGTTGTAATCGCTCAAAGTACGACCATCTTCGAGTTGCTTGCCGGCAAAG 527 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || |||||||| | |||| || |||||||| |||||||| || || Sbjct 526 ATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTTTGCTTGACGTTG 467 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || | ||| || |||| ||| || || || || ||||| || || || Sbjct 466 TCAATCGAGTCCGAAGGCTCTACATCCAACGTGATGGTCTTGCCAGTCAATGTCTTGACG 407 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 406 AAAATCTGCAT 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380912840603559