Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq1264 154 3e-32 seq1768 132 1e-25 >seq1264 Length=6109 Score = 154 bits (170), Expect = 3e-32 Identities = 263/370 (71%), Gaps = 16/370 (4%) Strand=Plus/Minus Query 150404 GGTGAACCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAAT 150463 |||||||| ||||||||||||||| ||||| || ||| | || || || || | ||| Sbjct 839 GGTGAACCTGGTGTTGGTAAAACAGCTATCGTCGAAGGACTTGCTCATCGTATTGTGAAT 780 Query 150464 GGTGATGTTCCAGAT-TCTATGAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGCATT 150522 |||||||| || || || || ||||| ||||| | ||| | |||||||||| || Sbjct 779 GGTGATGTCCCTGAACTCATTGCTCGATGT-GAAATCCACTCTCTTGATATGGGTGCGTT 721 Query 150523 TACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAACG--TGTAGACAATTTGCTACAA 150580 | ||||||| | ||||| ||||||||||| |||||| | | || || | | | || Sbjct 720 GATTGCTGGTGCCAAGTACCGTGGTGAATTTGAAGAAAGACTCAAGGCAGTAT--TGAAA 663 Query 150581 GAACTAAAAGAACGCGATG---ATGTTATTCTGTTCATCGATGAAATCCATACTATTATG 150637 ||| || ||||| | || | | |||| |||||||||||||||| || ||| | Sbjct 662 GAAGTACAAGAAAGTGAAGGCAAAATTATCTTGTTCATCGATGAAATGCACTTGATTCTT 603 Query 150638 GGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATGAGC-AATATGTTAAAACCTGCTC- 150695 ||||||||||| || || ||| | ||||| ||| ||| || | ||||| ||| Sbjct 602 GGTGCTGGTGCTAC---AGGTGGTGCGATGGAT-GCAGCTAATTTGCTCAAACC-ACTCT 548 Query 150696 TATCTCGCGGTGAAATTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACA 150755 | |||| |||||| | || ||| ||||| || |||| || ||||| || ||| || Sbjct 547 TGGCTCGTGGTGAATTACGATGCATTGGTGCCACCACCTTGGAAGAATACCGCAAATACG 488 Query 150756 TTGAAAAAGA 150765 |||| || || Sbjct 487 TTGAGAAGGA 478 >seq1768 Length=20761 Score = 132 bits (146), Expect = 1e-25 Identities = 258/370 (70%), Gaps = 16/370 (4%) Strand=Plus/Plus Query 150404 GGTGAACCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAAT 150463 |||||||| ||||||||||||||| ||||| || ||| | || || || || | ||| Sbjct 7051 GGTGAACCTGGTGTTGGTAAAACAGCTATCGTCGAAGGACTTGCTCATCGTATTGTGAAT 7110 Query 150464 GGTGATGTTCCAGAT-TCTATGAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGCATT 150522 || ||||| || || || || | ||| || || | ||| | |||||||||| || Sbjct 7111 GGCGATGTCCCTGAACTCATTGCTCGGTGT-GAGATCCACTCTCTTGATATGGGTGCGTT 7169 Query 150523 TACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAACG--TGTAGACAATTTGCTACAA 150580 | ||||||| | ||||| ||||||||||| |||||||| | || || | | | || Sbjct 7170 GATTGCTGGTGCCAAGTACCGTGGTGAATTTGAAGAACGACTCAAGGCAGTAT--TGAAA 7227 Query 150581 GAACTAAAAGAACGCGATG---ATGTTATTCTGTTCATCGATGAAATCCATACTATTATG 150637 ||| || ||||| | || | | |||| ||||| |||||||||| || ||| | Sbjct 7228 GAAGTACAAGAAAGTGAAGGCAAAATTATCTTGTTCGTCGATGAAATGCACTTGATTCTT 7287 Query 150638 GGTGCTGGTGCGACTGGCGGCGGTTCTTTGGATATGAGC-AATATGTTAAAACCTGCTC- 150695 ||||||||||| || || ||| | ||||| ||| ||| || | ||||| ||| Sbjct 7288 GGTGCTGGTGCTAC---AGGTGGTGCGATGGAT-GCAGCTAATTTGCTCAAACC-ACTCT 7342 Query 150696 TATCTCGCGGTGAAATTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACA 150755 | |||| || ||| | || ||| ||||| || |||| || ||||| || ||| || Sbjct 7343 TGGCTCGTGGCGAATTACGATGCATTGGTGCCACCACCTTGGAAGAATACCGCAAATACG 7402 Query 150756 TTGAAAAAGA 150765 | || || || Sbjct 7403 TGGAGAAGGA 7412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147511986223834