Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq2092 107 2e-18 seq580 104 2e-17 seq5008 102 7e-17 seq419 102 7e-17 seq2232 98.7 8e-16 >seq2092 Length=13256 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || ||||| || || |||||||| ||||| || || |||||||| Sbjct 11695 ATGCAGATCTTCGTAAAGACCTTGACGGGTAAGACCATCACATTGGATGTCGAACCTTCG 11754 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||||||||||| ||||| || || | || ||||||| Sbjct 11755 GATTCGATTGATAATGTCAAGCAAAAAATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 11814 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | |||||||| ||||| ||| | |||||| | ||| || |||||| ||| Sbjct 11815 CAACGTTTGATCTTTGCCGGCAAGCAACTCGAAGATGGTCGCACTTTGAGCGATTACAAC 11874 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || ||||| ||||| ||| ||||| |||| Sbjct 11875 ATCCAAAAGGAATCGACTTTGCACTTGGT 11903 >seq580 Length=37562 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || ||| | || || || || ||||| || ||||||||| Sbjct 8721 ATGCAAATCTTTGTCAAGACACTCACCGGAAAGACAATTACGTTGGACGTGGAACCTTCG 8662 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | ||||||||||||| ||||| || || | || ||||||| Sbjct 8661 GACTCGATTGATAACGTCAAGCAAAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 8602 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | |||||||| |||||||||||||||||| ||| | || || || Sbjct 8601 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGATGGACGTACTCTTAGTGACTACAAT 8542 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||| ||||| || ||||| |||| || | |||||||| ||||| Sbjct 8541 ATCCAAAAGGAATCGACCTTGCACTTGGTGTTGCGTTTACGAGGCGGGAT 8492 Score = 102 bits (112), Expect = 7e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| || ||||| |||||||||||| || ||||| || Sbjct 8037 ATGCAAATCTTTGTCAAAACTTTGACGGGAAAAACCATTACCTTGGATGTTGAACCATCC 7978 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || |||||||||| ||| ||||| || || | || |||||| Sbjct 7977 GACTCGATTGATAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATCCCTCCGGATCAA 7918 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGA--TTCTAAAACTATGGCCGATTATA 28731 || | | || || || || |||||| | ||||| || | | || | || || | Sbjct 7917 CAACGTTTGATTTTCGCTGGTAAACAACTTGAAGACGGTCGTACATTAAG--TGACTACA 7860 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||||| ||||||||||| ||| ||||||| | | || ||||| || Sbjct 7859 ACATTCAAAAGGAATCTACTCTCCACTTGGTATTGCGTCTTCGTGGAGGCAT 7808 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || || ||||| || || || || ||||| || |||||||||| Sbjct 8265 ATGCAAATTTTCGTCAAGACATTGACTGGAAAGACTATTACACTTGACGTGGAACCTTCA 8206 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | || | || ||||| || |||||||| || | || ||||||| Sbjct 8205 GACTCAATTGATAATGTGAAACAAAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 8146 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | || ||||| ||||||||| | |||||| | || | || || ||| Sbjct 8145 CAACGTTTAATTTTTGCTGGCAAACAACTCGAAGATGGTCGTTCTCTCAGTGACTACAAC 8086 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || ||||||||||| || | || || | ||||| || || || Sbjct 8085 ATTCAGAAGGAATCTACTCTACATCTAGTCTTGCGTTTACGTGGTGGTAT 8036 >seq5008 Length=14815 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 28547 TGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGA 28606 |||| | ||||| || || || || ||||| || || || ||||| || || || Sbjct 6215 TGTAGAGATGCAGATCTTCGTCAAGACATTGACAGGCAAGACCATCACGTTGGATGTCGA 6274 Query 28607 ACCTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGT 28666 |||||| || || | | || |||||||||| || ||||| || || | || Sbjct 6275 ACCTTCGGATTCGATTGATAATGTCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCTCC 6334 Query 28667 AGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 28726 ||||||||| | | |||||||| ||||||||| | |||||| ||| || ||| Sbjct 6335 AGATCAACAACGTTTGATCTTTGCAGGCAAACAACTTGAAGATGGACGTACTTTGAGCGA 6394 Query 28727 TTATAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| ||||| ||||||||||||||||| || |||| Sbjct 6395 TTACAACATCCAAAAAGAATCTACTCTTCATTTGGT 6430 >seq419 Length=23932 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || ||||| |||||||||||||||||| ||| |||||||| Sbjct 23742 ATGCAAATCTTTGTCAAGACATTGACGGGTAAAACCATTACCCTCGATGTCGAACCTTCG 23801 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | | || |||||||||| ||| ||||| || || | || |||||| Sbjct 23802 GATTCTATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATTCCACCTGATCAA 23861 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT 28709 || | || |||||||| ||||| ||| | |||||| Sbjct 23862 CAACGTCTCATCTTTGCCGGCAAGCAACTCGAAGAT 23897 >seq2232 Length=15861 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 || ||||| || || || || ||||| || || || ||||| || || || ||| Sbjct 393 AATATGCAGATTTTCGTCAAGACATTGACTGGCAAGACCATCACGTTGGATGTAGAGCCT 452 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || || | | | | |||||||||| ||| ||||| || || | || |||| Sbjct 453 TCGGACTCGATTGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGTATTCCTCCAGAT 512 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 ||||| | | |||||||| ||||| ||| | |||||| | ||| || |||||| Sbjct 513 CAACAACGTTTGATCTTTGCCGGCAAGCAACTCGAAGATGGTCGTACTTTGAGCGATTAC 572 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||||||||| ||||| ||| ||||| |||| Sbjct 573 AACATTCAAAAGGAATCGACTTTGCACTTGGT 604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425377150416207