Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq224 183 2e-41 >seq224 Length=84125 Score = 183 bits (202), Expect = 2e-41 Identities = 435/650 (67%), Gaps = 12/650 (2%) Strand=Plus/Minus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 |||||| || || | | ||||||| ||||| || || || |||||| ||||| || Sbjct 27701 ATTTGGGCAAAAAAGACTCCAATCACCATTTGCTTCGACACGCTTCATAAACAAATCAGG 27642 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 ||||||| |||||||| | ||| | || | | ||| || || ||||| || || Sbjct 27641 GATCCACAAGGCATAAAAGAGATCACGAGCACGGTGTAGTTCATTGCCATGATTTTTCTT 27582 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 ||||| || || ||||||||||| | ||||||||||| | ||| || ||||| ||| Sbjct 27581 GAGATCCAAAAACTCAAAAATATCAGCATGCCATGGTTCAAGATACATGGCAAACGAACC 27522 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 || | || || |||||||| || || || | || || |||||||| ||| | ||| Sbjct 27521 CTTACGCTTACCACCACCTTGGTCAACATAGCGAGCGGTATCATTGAATACTCGAAGCAT 27462 Query 26128 TGGAACTAATCCAGTT-GAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAA 26186 |||| | || | ||| || | || || || | | |||| | ||| || | || Sbjct 27461 GGGAA-TGATACCGTTCGATGAGCCATTGGTACCACGAATATAACTATTTGTTGAGCGAA 27403 Query 26187 TATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAA 26246 ||| ||| || | ||||| |||||||||||||| |||||| ||||| | | | Sbjct 27402 TATTGTGGATATTCACGCCGATACCACCAGCCCATTTGGAAATACAAGCACATTGTTTCA 27343 Query 26247 CTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATA 26306 ||||| |||| |||| || ||| | ||||| | || | ||| ||||| || | Sbjct 27342 AAGTATCATAAATACCTTCAATCGAATCGTCCTTCATGGCCAAAAGAAAGCAAGACGACA 27283 Query 26307 ATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGT--ATAATATCC 26364 |||| | | | | || || | ||| || | || ||||||||||| || | || || Sbjct 27282 ATTGTGGACGTGGAGTACCAGCATTGAAAAGAGTAGGTGTAGCATGGGTGAAGAACAT-- 27225 Query 26365 TTCACTCAAAGCTGTATAAGTTTCAAGAACTTCATCGATATTGTAATTACTAACTTCAAT 26424 || ||||| | |||||| || | | || || | |||| | ||| || ||| Sbjct 27224 TTGACTCATGTATTCATAAGTGTCCAAAGCTCCAGCAATATCTTCTTTATGAATACCAAC 27165 Query 26425 AGCTGTTCTTAACCACATATATTGAGGTCGTTCAATTACATTATTTTCCGCAT-CTCTAA 26483 ||| | | ||| | ||||||||||| ||| |||||| | || || Sbjct 27164 AGCAACACGCATGATCATGTGCTGAGGTCGTTC----ACAAACTTTTCCATTTACTTGAA 27109 Query 26484 TCAAATAAGATTTTTCTAAAGTTTTCAATCCAAAATAATCATGATTGAAA 26533 |||||| ||||| |||||||| |||||||| ||||||| ||| ||| Sbjct 27108 GCAAATAGCTCTTTTCCAAAGTTTTAAATCCAAAGTAATCAT-ATTCAAA 27060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253023553427975