Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2194 138 1e-27 >seq2194 Length=9614 Score = 138 bits (152), Expect = 1e-27 Identities = 344/514 (67%), Gaps = 10/514 (2%) Strand=Plus/Minus Query 138180 GCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTA 138239 || ||||| || | ||| || || ||||| ||||| ||||| ||||| ||||| ||||| Sbjct 4063 GCAACACCGATCGAACCAACACCTGGACCACCACCACCATGGGGAATGCAGAAAGTCTTG 4004 Query 138240 TGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGT 138299 || || || | || ||||||||||| ||| | | || || | | | | || || Sbjct 4003 TGCAAGTTCAAGTGGCATACATCTGCTCCAATGCTGCCAGGGTTGGTCAAAGCAACTTGA 3944 Query 138300 GCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACAT 138359 || || | || |||||||| | || || || ||||| | ||| || | | | | Sbjct 3943 GCGTTCATGTTGGCACCATCCATGTAAACTTGGCCACCGTGGTCGTGGATCAATTGA--- 3887 Query 138360 ATC-TGTC--TGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCAT-AAT 138415 ||| |||| ||| | | ||| || |||||| || |||||||| || ||||| || Sbjct 3886 ATCATGTCCTTGACGCCTTCTTCGAAGACACCAAAGGTAGATGGATAAGTGATCATGAAG 3827 Query 138416 ACATGAGAGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTT 138475 || ||||||| | || | | | | || | || | ||| ||| | ||| Sbjct 3826 GCACT-GAGTTCATGGGCATGCTTCTTGACCTTTTCTTCCAAATCAGCTCGGTCAACGTT 3768 Query 138476 GCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGG 138535 ||||| |||| |||||||| | || || ||||| || |||||||| ||||||||||| Sbjct 3767 GCCATTGGCATCTGACTTGACAACAACGACCTTCATACCAGCCATGACAGCACTAGCAGG 3708 Query 138536 ATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATCTCC-TGATC 138594 || || || || || ||| |||| || || || ||||| | | | | ||||| | Sbjct 3707 GTTGGTACCGTGAGCCGACACTGGGATGAGGCAAACATTGCGGTGACCTTCTCCAATAGA 3648 Query 138595 CTTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTTAG 138654 ||| || || | | || || || || || ||||| ||||| || | || | ||| | Sbjct 3647 CTT-TTGGTACGAACGAATAGCCAAAAGACCAGCATATTCACCTTGGGCACCAGAGTTTG 3589 Query 138655 GTTGTAATGATATAGAATCAAAACCTGTGATATC 138688 |||| | || | || | | ||||| ||||| || Sbjct 3588 GTTGCGACGAAACAGCAGCGAAACCAGTGATTTC 3555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578959802519160