Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq224 293 3e-74 seq2584 113 5e-20 seq1925 87.8 2e-12 >seq224 Length=84125 Score = 293 bits (324), Expect = 3e-74 Identities = 995/1524 (65%), Gaps = 47/1524 (3%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTAT---CTTCAA 75184 || || | ||| | || ||||||||| | ||||| | || ||||||||| |||||| Sbjct 27054 CGTGATTTTGAATATGATTACTTTGGATTTAAAACTTTGGAAAAGAGCTATTTGCTTCAA 27113 Query 75185 CGGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGC 75244 | |||| | | ||| || ||| ||||| ||||||| || || | || Sbjct 27114 G---TAAATGGAAAAGTTTGTGAACGACCTCAGCACATGATCATGCGTGTTGCTGTTGGT 27170 Query 75245 ATCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATG 75304 || || ||||| |||| | | ||||| || || || | ||| ||| ||| Sbjct 27171 ATTCATAAAGAAGATATTGCTGGAGCTTTGGACACTTATGAATACATGAGTCAA---ATG 27227 Query 75305 TTCATTCACGCA----ACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTC 75360 ||| ||||| || ||||| || || |||||||||||||| ||| | || || |||| Sbjct 27228 TTC-TTCACCCATGCTACACCTACTCTTTTCAATGCTGGTACTCCACGTCCACAATTGTC 27286 Query 75361 CAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTAC 75420 |||||| ||| | |||| ||||| || || || | ||||| |||| ||| | | Sbjct 27287 GTCTTGCTTTCTTTTGGCCATGAAGGACGATTCGATTGAAGGTATTTATGATACTTTGAA 27346 Query 75421 GGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAG 75480 | ||||| || || || |||||||| ||||| || || | ||||| || | | Sbjct 27347 ACAATGTGCTTGTATTTCCAAATGGGCTGGTGGTATCGGCGTGAATATCCACAATATTCG 27406 Query 75481 AGCCAATAAATC-TCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGC 75539 | || |||| | |||||| || || ||||| ||| | ||||| ||||| |||| Sbjct 27407 CTC-AACAAATAGTTATATTCGTGGTACCAATGGCTCATCGAACGGTATCATTCCCATGC 27465 Query 75540 TTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGT 75596 |||| ||||| || | || || |||||||| | |||| || || || ||||| | Sbjct 27466 TTCGAGTATTCAATGATACCGCTCGCTATGTTGACCAAGGTGGTGGTAAGCGTAAGGGTT 27525 Query 75597 CCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTT-ACGA 75655 | | || | || | |||||||||||||| ||||| | ||||| | || | | || Sbjct 27526 CGTTTGCCATGTATCTTGAACCATGGCATGCTGATATTTTTGAGTTTTTGGATCTCAAGA 27585 Query 75656 CTCAACCAAGGTGACGAAGAGGCTCGGTG-TAGAGATCTCTTTTCATCCCTGTGGATTCC 75714 || || || | ||| | | ||| | | |||||||||| || ||||||| || Sbjct 27586 AA-AATCATGGCAATGAACTA-CACCGTGCTCGTGATCTCTTTTATGCCTTGTGGATCCC 27643 Query 75715 AGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAA 75774 || | || |||||||| || || | |||| | ||| |||||| || ||| | | Sbjct 27644 TGATTTGTTTATGAAGCGTGTCGAAGCAAATGGTGATTGGAGTCTTTTTTGCCCAAATGA 27703 Query 75775 GGCACCAGGTCTCTCCGAC-GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATG 75833 || | || | || || | ||| |||| |||||||| | ||||| || | || Sbjct 27704 AGCTTCTGGCTTGCAAGATTGCTG-GGGCAAGGAATTTGAAGCTTTGTACACCAAATTTG 27762 Query 75834 AAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTC 75892 || || ||| | || ||| | | || | | | || ||| || |||||| Sbjct 27763 AATCTGAAGGTCGTGCTCGAAAGACAAT-CAAGGCTCAGCAATTATGGTTTGCCATTCTC 27821 Query 75893 AAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAG 75952 | || || | || ||||| |||||||||||| | ||||| |||||||| || || Sbjct 27822 GATTCTCAAATCGAAACTGGTACACCATATATGTTGTACAAAGATGCTTGCAATTCCAAA 27881 Query 75953 AGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTT-TGCACGGAAATTTTAGA 76011 |||||| | || || || || || || | | | ||| ||| ||| || | || Sbjct 27882 TCGAACCAACAAAACTTAGGTACTATTAA-ATCGAGTAACTTGTGCTGTGAAGTTATCGA 27940 Query 76012 GTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTA 76071 || ||| || ||||| |||||| |||||||||||||| || || ||| |||| | Sbjct 27941 ATATACAAGCAAAGATGAAGTGGCTGTGTGCAATTTGGCATCGATTGCTCTTTCAAAATT 28000 Query 76072 TGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGT 76131 ||||||||| | | | ||||| | | || | ||| ||||||| || ||||| Sbjct 28001 TGTCAATGATGGT----GTA--TTTGACTTTACCAATTTGCATAAAATCACCAAAATTGT 28054 Query 76132 TACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGA-GA--CTGCGCG 76188 ||| ||| ||||| ||| ||||| | || | || || |||| || || || Sbjct 28055 TACTCGCAATTTAAACAAAGTGATTGAAATCAACTACTACCCTATTGAAGAAGCTAAACG 28114 Query 76189 AAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATT 76248 || |||||||| || | ||||||||| | ||||||||||| || || |||| || Sbjct 28115 AAGC---AATATGCGTCATCGTCCTATTGGTATTGGTGTTCAAGGGCTTGCTGATGCCTT 28171 Query 76249 TATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTT 76308 |||| | | || | ||||| || | |||||||||| | | ||| || ||||| Sbjct 28172 TATTCTCATGGGTTATCCTTTTGAATCTGCTGAAGCCAAGAAACTCAATATTCAAATCTT 28231 Query 76309 TGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTC 76368 |||||| || || || |||||| |||| | ||| | || ||| ||| | Sbjct 28232 TGAAACTATTTACCATGCATCCATGGAAACATCCATGGAAATTGCCAAAGAATTTGGTCC 28291 Query 76369 CTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGA 76428 || || || | || || ||||| | | |||| | | || | ||||||||||| Sbjct 28292 ATACGAAACGTATGCAGGCTCTCCTGTAAGCAAAGGTATCTTCCAATATGATATGTGGGG 28351 Query 76429 AG---GTGAAACCAAGCTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAA 76485 | | ||| || || | ||||||| | ||||| | | | || | Sbjct 28352 TGTTTCTCCAACAAATCT---TTGGGACTGGGCTACACTCAAAGCTCAAGTGGCCAAGCA 28408 Query 76486 GGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTT 76545 ||| |||| || ||||||| | || |||||||||||||| || || |||||||| | Sbjct 28409 TGGTATTCGCAATTCTCTTTTGCTTGCCCCAATGCCAACAGCTTCTACTGCACAAATTCT 28468 Query 76546 GGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGC 76605 || || ||||||| ||||||||| ||| | ||||| ||| | | || || Sbjct 28469 TGGCAACAATGAATCAATTGAACCATTTACATCCAACATGTACTCTCGTCGTGTTCTTGC 28528 Query 76606 AGGTGAGTTTGTCATTGTCAACAA 76629 ||||| ||| ||||||||||| Sbjct 28529 TGGTGAATTTACAATTGTCAACAA 28552 >seq2584 Length=5567 Score = 113 bits (124), Expect = 5e-20 Identities = 292/434 (67%), Gaps = 12/434 (3%) Strand=Plus/Minus Query 65089 GCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTG 65148 || ||||| ||| || ||||| ||||| || || ||||| ||| | || | |||| | Sbjct 3377 GCCTTTGCTGCTGTTGAAGGTATTTTCTTTTCAGGATCATTTTGCTCGATCTTTTGGCTC 3318 Query 65149 AAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAG 65208 ||||| || ||| | ||||| || || |||| || || ||||||||||| || |||||| Sbjct 3317 AAGAAACGTGGTTTGATGCCTGGTTTAAGCTTTTCGAACGAACTTATTTCTCGTGATGAG 3258 Query 65209 GGTCTCCACCAGGAGTTTGCCGTG---GAGCTCTTCAAGACTTTGCGTAATAGACCCACT 65265 ||||| || || |||||| || | | ||| | || | || | | || Sbjct 3257 GGTCTTCATTGTGACTTTGCC-TGCCTCATGTATTCCAAGCTCATC--AACAAGCTTTCT 3201 Query 65266 ACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTTCATCTTG 65325 | |||| ||| || | || | || || |||| ||||| || || ||| | Sbjct 3200 AACGAACGTATTCATGAAATTATTGGGGATGCTGTTGCAATTGAAAAGCAATTTGTCTCG 3141 Query 65326 GACGCACTCCCATGTA-ATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGTACATTG- 65383 || | || ||| ||| | ||||| ||||||||||| |||| ||| ||||||| Sbjct 3140 GAATCTCTTCCA-GTAGAACTCATTGGTATGAACTCATCTCTCATGTGCGAATACATTGA 3082 Query 65384 AGTATGTGTCGGATCGTCTCCTCAAACAAGTTGG-GGTGCCACCCATTTGGAACGCGAAG 65442 | | |||| | ||||| || ||| || |||| | | ||| | ||| || || ||| Sbjct 3081 ATTCTGTG-CTGATCGCCTTCTCCAAGCCCTTGGAGCTACCAAGC-TTTACAATGCCAAG 3024 Query 65443 AATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAG 65502 |||||||| |||| ||||| | || ||| | || ||||||||||| || || ||| Sbjct 3023 AATCCATTCGACTGGATGGACATGATATCTCTTCAAGGAAAGACCAACTTTTTCGAAAAG 2964 Query 65503 CGAGTTGGGGACTA 65516 || || || || || Sbjct 2963 CGTGTCGGTGAATA 2950 >seq1925 Length=14366 Score = 87.8 bits (96), Expect = 2e-12 Identities = 240/362 (66%), Gaps = 8/362 (2%) Strand=Plus/Minus Query 14426 GAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCATGGT 14485 ||||| || || || ||| |||| | || ||| | || | ||||| ||||| |||||| Sbjct 8397 GAAATCAAAGTTGCTCAATTGGCTGGTTACGTCTCTGAACACTCTGCATACCATCATGGT 8338 Query 14486 GAAGTATCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAAACAAC 14545 |||| | ||| | ||||| || ||||| | ||||| || || |||| Sbjct 8337 GAAGCAAGTTTACATGGGACGATCATTGGTATGGCACAAGACTATGTTGG---AAGCAAC 8281 Query 14546 A--TTAACCTT-CTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAGGAT 14602 | |||| || ||| || ||| ||||||||||| ||| | |||||||| ||| Sbjct 8280 AATTTAAATTTACTTTCTCCTAATGGGCAATTTGGTACTCGTTTACAAGGTGGTAAAGAT 8221 Query 14603 GCTTCTCAGA-CGAGGTACATTTTCACAAAACTTACCAAGGAGGCTCGCAAGATCTTTGA 14661 ||| | ||| | | || | ||||||||| | || | | || | | | | Sbjct 8220 GCTGC-CAGCGCTCGTTATGTGTTCACAAAATTGGAAAATTTGACACGTCTTGTGTATCA 8162 Query 14662 TCCTCGGGATGACCCGATCCTCAACTACTTGGACGATGATGGACGCTCCATTGAACCAGA 14721 ||| ||||| | | ||||||||||| || || || | || |||||||| || Sbjct 8161 TCCATTAGATGATAGTGTTTTGAACTACTTGGAAGAAGAAGGTCTTTCGATTGAACCTGA 8102 Query 14722 CTTTTACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGGTACGGG 14781 |||||||||||||| | | ||||||| | | ||||| | ||| ||||| ||||| || Sbjct 8101 CTTTTACATGCCAATTATCCCAATGGCATTGATCAATGGTAACGAAGGTATTGGTACTGG 8042 Query 14782 TT 14783 || Sbjct 8041 TT 8040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596529831179040