Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq419 111 3e-19 seq580 89.7 9e-13 >seq419 Length=23932 Score = 111 bits (122), Expect = 3e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | || | |||| ||||||||||| || || || || Sbjct 23521 ATTTGCATACCACCACGAAGACGCAAGACCAAATGCAATGTAGATTCCTTTTGGATGTTG 23462 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||| ||| || | ||| || | |||||| ||||||||||| | | |||||| Sbjct 23461 TAGTCGCTTAAAGTACGGCCATCTTCGAGTTGTTTACCGGCAAAAATGAGGCGTTGTTGA 23402 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || ||||| || ||||| || || ||| | ||| ||| | || ||| Sbjct 23401 TCTGGAGGAATGCCTTCCTTGTCTTGGATCTTTTGTTTAACATTATCAATGGAGTCCGAA 23342 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || || || || || || || ||||| || | ||| |||||||| |||||||| Sbjct 23341 GGTTCGACGTCAAGTGTGATCGTCTTACCGGTCAACGTCTTTACAAAAATTTGCAT 23286 Score = 89.7 bits (98), Expect = 9e-13 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | ||| || || |||| ||||||||||| || || ||||| Sbjct 23294 AATTTGCATGCCACCACGCAAACGGAGGACCAAATGCAATGTAGATTCCTTTTGGATATT 23235 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| || |||| || || | ||||| || ||||| || | | ||||| Sbjct 23234 GTAGTCGCTCAAAGTTCGTCCGTCTTCGAGCTGTTTACCAGCAAAGATAAGACGTTGTTG 23175 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| ||||| || ||||| |||||||| || || ||| | || || | || || Sbjct 23174 ATCTGGAGGAATGCCTTCCTTATCTTGAATCTTTTGTTTCACGTTGTCGATGGAGTCCGA 23115 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || || || || || || || ||||| || | || || ||||| |||||||| Sbjct 23114 TGGTTCGACGTCAAGTGTGATCGTCTTACCGGTCAAAGTCTTAACAAAGATTTGCAT 23058 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || |||||||| || | | ||||||||||| || || ||||| || Sbjct 23897 ATCTTCGAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTT 23838 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || || || | ||| ||||| ||| |||| || || || || || || Sbjct 23837 GTCTTGGATCTTTTGCTTGACATTGTCAATAGAATCCGAAGGTTCGACATCGAGGGTAAT 23778 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || | || || ||||| |||||||| Sbjct 23777 GGTTTTACCCGTCAATGTCTTGACAAAGATTTGCAT 23742 >seq580 Length=37562 Score = 89.7 bits (98), Expect = 9e-13 Identities = 164/240 (68%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | || || | || ||||| | |||| || || ||| || Sbjct 8030 ATTTGCATACCACCACGTAAACGCAAGACTAGATGTAGAGTAGATTCCTTCTGAATGTTG 8089 Query 193185 TAGTCG----GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTG 193240 ||||| || |||| | ||| || | |||||| || ||||||||||| | || Sbjct 8090 TAGTCACTGAGAGAACGACC----ATCTTCGAGTTGTTTGCCAGCAAAAATTAAACGTTG 8145 Query 193241 TTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATC 193300 |||||| ||||| || |||||||| ||||| || || ||| | ||| ||| | || Sbjct 8146 TTGATCTGGAGGGATGCCTTCTTTGTCTTGAATCTTTTGTTTCACATTATCAATTGAGTC 8205 Query 193301 GGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||| || || || || || ||||| || || || | || || || || |||||||| Sbjct 8206 TGAAGGTTCCACGTCAAGTGTAATAGTCTTTCCAGTCAATGTCTTGACGAAAATTTGCAT 8265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899594426788560