Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2584 161 1e-34 seq580 120 4e-22 seq419 104 3e-17 seq2232 87.8 3e-12 >seq2584 Length=5567 Score = 161 bits (178), Expect = 1e-34 Identities = 388/579 (67%), Gaps = 8/579 (1%) Strand=Plus/Plus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || ||||| ||| || | ||| ||||| | || || | |||||| ||| |||| Sbjct 3235 CAGGCAAAGTCACAATGAAGACCCTCATCACGAGAAATAAGTTCGTTCGAAAAGCTTAAA 3294 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTA-CTAGAAAAGAA 18276 || ||||| | ||| | ||| || |||||||| ||||| || ||| | | |||||||| Sbjct 3295 CCAGGCATCAAACCACGTTTCTTGAGCCAAAAGATCGA-GCAAAATGATCCTGAAAAGAA 3353 Query 18277 TATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAA-CTGTATTTATTGCTC 18334 ||||| ||||| ||| || || |||| | | ||| ||| | | | | || |||| | Sbjct 3354 AATACCTTCAACAGCA-GCAAAGGCTACAATACGTTCTGCATACGCAGCAATT-TTGC-C 3410 Query 18335 AGTAT-CCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393 | | |||||| | ||||||| ||| | ||| || || | || ||||| Sbjct 3411 ATTGCACCATTTAAGAGCCCATTTAGCTTTACGTTGTACACAAGGAATCGTATCAATAGC 3470 Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 | || | | ||||||||| || || |||||||| || || | ||| ||||| Sbjct 3471 CCTCAAAACACGATCTTTTTCCACAATGTCCTTGATATAAGTATCAATGAGCAACGAATA 3530 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 | ||| ||||| || |||| ||||| || ||||| | |||||| ||||||| || || Sbjct 3531 AACTTCTGAATGAATATTTTCGATAGCAATTTGAAATCCATAAAAACATCTAGCTTCAGG 3590 Query 18514 ATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGA 18573 ||| | || | |||| | ||||||| ||||| || ||||| || | | Sbjct 3591 TACTTGTACTTCATTGGAAAAATTCATGGCCAAATTTTCATTTACAATACCATCCGATGC 3650 Query 18574 TGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCA 18633 ||| ||||||||||| |||| |||| || | |||||| ||| | || || |||| Sbjct 3651 TGCAAAAAATGCCAATACATGGGTAATAAAGAATCGTTCATTGTCCGTAAGTTTTGTCCA 3710 Query 18634 TTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTG 18693 || | ||||| | ||||| | |||||| | ||||||||| | ||| || | Sbjct 3711 ATCTTTCATATCATGGACAAGATCTAATTCTTCTGCAGTCCAAAAACTAGCTTCAGCTTT 3770 Query 18694 TTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732 || ||||||| | | |||| ||||| |||||||| Sbjct 3771 CTTATACATTTCCCACACATCTGTGTGTTGAATAGGAAA 3809 >seq580 Length=37562 Score = 120 bits (132), Expect = 4e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || |||||||||||||| ||||||||| | || || ||| ||| Sbjct 8265 ATGCAAATTTTCGTCAAGACATTGACTGGAAAGACTATTACACTTGACGTGGAACCTTCA 8206 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || ||| || |||||| | || || ||||| ||||||||||| |||||||| ||| Sbjct 8205 GACTCAATTGATAATGTGAAACAAAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 8146 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| | || |||| ||| || || || ||||||||| Sbjct 8145 CAACGTTTAATTTTTGCTGGCAAACAACTCGAAGAT 8110 >seq419 Length=23932 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || ||||| || || || || ||| | || |||||| || Sbjct 23058 ATGCAAATCTTTGTTAAGACTTTGACCGGTAAGACGATCACACTTGACGTCGAACCATCG 23117 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || || ||||||||| | || || |||||||| |||||||| |||||||| ||| Sbjct 23118 GACTCCATCGACAACGTGAAACAAAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCAA 23177 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||| | | || | ||| ||||| ||||||||||| Sbjct 23178 CAACGTCTTATCTTTGCTGGTAAACAGCTCGAAGA 23212 >seq2232 Length=15861 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || ||||||||||| || || || || || || || || ||| Sbjct 396 ATGCAGATTTTCGTCAAGACATTGACTGGCAAGACCATCACGTTGGATGTAGAGCCTTCG 455 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || ||| ||||| || | || || || || || ||||| || |||||||| ||| Sbjct 456 GACTCGATTGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 515 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| | ||||| | |||||| ||||| ||||||||| Sbjct 516 CAACGTTTGATCTTTGCCGGCAAGCAACTCGAAGAT 551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731823211582800