Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2584 122 2e-22 seq580 116 7e-21 seq419 107 4e-18 seq4831 84.2 4e-11 >seq2584 Length=5567 Score = 122 bits (134), Expect = 2e-22 Identities = 397/608 (65%), Gaps = 20/608 (3%) Strand=Plus/Plus Query 49824 CATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAG-TTAA 49882 || ||||| ||| ||| | |||||| || | ||| |||| ||| || | ||||| |||| Sbjct 3235 CAGGCAAAGTCACAATGAAGACCCTCATCACGAGAAATAAGTTCGTT-CGAAAAGCTTAA 3293 Query 49883 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTA-CTAGAAAAGA 49941 || ||||| || || | || || |||||||| || || |||||| | | ||||||| Sbjct 3294 ACCAGGCATCAAACCACGTTTCTTGAGCCAAAAGATCGA-GCAAAATGATCCTGAAAAGA 3352 Query 49942 ATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAAC--ATTAATTTATC-AT 49998 | ||||| || ||| ||||| |||| || | | || || || | ||||| | || Sbjct 3353 AAATACCTTCAACAGCAGCAAAGGCTACAATACGTTCTGCATACGCAGCAATTTTGCCAT 3412 Query 49999 CTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAG 50058 | ||| || | |||||| | ||||| || | | |||| || | || |||| Sbjct 3413 TGCA---CCATTTAAGAGCCCATTTAGCTTTACGTTGTACACAAGGAATCGTATCAATAG 3469 Query 50059 CTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAAT 50118 | | || | || |||||| || | || |||| Sbjct 3470 CCCTCAAAACACGATCTTTTTCCACAATGTCCTTGATATAAGTATCAATGAGCAACGAAT 3529 Query 50119 ACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTG 50178 | | ||| ||||| | | ||| ||||| ||||||||| |||||| ||| ||||| | Sbjct 3530 AAACTTCTGAATGAATATTTTCGATAGCAATTTGAAATCCATAAAAACATCTAGCTTCAG 3589 Query 50179 AATACT-GAACTTC---GGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCA 50234 |||| | ||||| |||||| | || | | ||||| ||| |||||||||||| Sbjct 3590 G-TACTTGTACTTCATTGGAAAA-ATTCATGG--CCAAATTTTCATTTACAATACCATCC 3645 Query 50235 GATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTT 50294 |||||||| || ||||| || || | ||||||| | |||||| || | | ||| Sbjct 3646 GATGCTGCAAAAAATGCCAATACATGGGTAATAAAGAATCGTTCATTGTCCGTAAGTTTT 3705 Query 50295 TCCCAAGATTCAAGATCGTTTGATAA-ATCTACTTCTTCTATTGTCCAAAATGATGCTAC 50353 |||| || | ||| | || || ||||| ||||||| |||||||| ||| | Sbjct 3706 GTCCAATCTTTCATATC-ATGGACAAGATCTAATTCTTCTGCAGTCCAAAAACTAGCTTC 3764 Query 50354 GGATTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAGTACATATCGTTT 50413 | ||| |||||||||| | | ||| |||| ||| ||||| || ||| |||| || Sbjct 3765 AGCTTTCTTATACATTTCCCACACATCTGTGTGTTGAATAGGAAAAAGCACAAATCGATT 3824 Query 50414 AGTATTTT 50421 | |||| Sbjct 3825 TGGGTTTT 3832 >seq580 Length=37562 Score = 116 bits (128), Expect = 7e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || || || | |||||| ||||| || || | ||||| || ||| || || || || || Sbjct 7808 ATGCCTCCACGAAGACGCAATACCAAGTGGAGAGTAGATTCCTTTTGA-ATGTTGTAGTC 7866 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | |||||| || | || || | |||||||||||| || || || | |||||||| || Sbjct 7867 ACTTAATGTACGACCGTCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCCGG 7926 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || ||||| || ||||| || || | || |||||| || || || || | ||| Sbjct 7927 AGGGATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTATCAATCGAGTCGGATGGTTC 7986 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||||||||||| || || || ||||| | ||| || ||||| Sbjct 7987 AACATCCAAGGTAATGGTTTTTCCCGTCAAAGTTTTGACAAAGATTTGCAT 8037 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| | ||| || || || || || || | || || |||||| || ||| Sbjct 8492 ATCCCGCCTCGTAAACGCAACACCAAGTGCAAGGTCGATTCCTTTTGGATATTGTAGTCA 8551 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || ||| |||| ||||||||||| ||||||||||| || | |||||||| || Sbjct 8552 CTAAGAGTACGTCCATCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGA 8611 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| ||||| | || || ||| || || || || | ||| Sbjct 8612 GGAATACCTTCCTTGTCTTGAATTTTTTGCTTGACGTTATCAATCGAGTCCGAAGGTTCC 8671 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||||| || || || || | ||| || | ||| || ||||| Sbjct 8672 ACGTCCAACGTAATTGTCTTTCCGGTGAGTGTCTTGACAAAGATTTGCAT 8721 >seq419 Length=23932 Score = 107 bits (118), Expect = 4e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| || | ||| || || |||||||| | | |||||||||||||| || ||||| | Sbjct 23898 CATCTTCGAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGATCAGGTGGAATGCCTTCCT 23839 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 | ||||| || || | || ||||| |||||||| || | ||| || || || |||| Sbjct 23838 TGTCTTGGATCTTTTGCTTGACATTGTCAATAGAATCCGAAGGTTCGACATCGAGGGTAA 23779 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||||| || ||||| || | ||| || ||||| Sbjct 23778 TGGTTTTACCCGTCAATGTCTTGACAAAGATTTGCAT 23742 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | | ||| | || ||||| || |||| || || |||||| || || Sbjct 23287 ATGCCACCACGCAAACGGAGGACCAAATGCAATGTAGATTCCTTTTGGATATTGTAGTCG 23228 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || |||||| | || || | ||||||||||||||||| | | |||||||| || Sbjct 23227 CTCAAAGTTCGTCCGTCTTCGAGCTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGA 23168 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || || | ||| || || || || || || | ||| Sbjct 23167 GGAATGCCTTCCTTATCTTGAATCTTTTGTTTCACGTTGTCGATGGAGTCCGATGGTTCG 23108 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || ||||| || || || |||| ||| || ||||| Sbjct 23107 ACGTCAAGTGTGATCGTCTTACCGGTCAAAGTCTTAACAAAGATTTGCAT 23058 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| || | ||||||||||||||| || | | |||||||| || || || ||||| | Sbjct 23670 CATCTTCAAGTTGTTTACCAGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCT 23611 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 | ||||| || || | || || || || ||||| || | ||| || || ||||||| Sbjct 23610 TGTCTTGAATCTTTTGCTTGACGTTGTCAATGGAATCCGATGGTTCGACATCGAGAGTAA 23551 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||| ||||| || ||||| || | || || ||||| Sbjct 23550 TGGTCTTACCCGTCAATGTCTTCACGAAGATTTGCAT 23514 >seq4831 Length=17254 Score = 84.2 bits (92), Expect = 4e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 192345 CTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAA 192404 |||||| || ||||||||||| ||||||||| |||| || | |||||| |||||||| Sbjct 11411 CTCTTT-GA-ATATTATAATCCCGCAATGTTCGTCCATCTTCTAGTTGTTTGCCAGCAAA 11468 Query 192405 GATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTAT 192449 || | || | ||||||||| || || |||||||| ||||| || Sbjct 11469 TATGAGTCGCATTTGATCAGGAGGAATGCCTTCTTTTTCTTGGAT 11513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984412731404550