Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq580 118 2e-21 seq2584 113 8e-20 seq419 91.5 3e-13 >seq580 Length=37562 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | | || || |||| ||||| ||||| || || ||| || || || Sbjct 8036 ATACCACCACGTAAACGCAAGACTAGATGTAGAGTAGATTCCTTCTGAATGTTGTAGTCA 8095 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | ||| || | || || | |||||| |||||||||||||| | ||||| || || Sbjct 8096 CTGAGAGAACGACCATCTTCGAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGATCTGGA 8155 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || | ||| |||||| || | ||||| | ||| Sbjct 8156 GGGATGCCTTCTTTGTCTTGAATCTTTTGTTTCACATTATCAATTGAGTCTGAAGGTTCC 8215 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||| || || ||||| ||||| || | ||| || ||||| Sbjct 8216 ACGTCAAGTGTAATAGTCTTTCCAGTCAATGTCTTGACGAAAATTTGCAT 8265 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || || | ||| || ||||| || || | ||||| || || ||| || || || Sbjct 7808 ATGCCTCCACGAAGACGCAATACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCA 7867 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||| | || |||| || | |||||||||||| ||||| || | ||||| || || Sbjct 7868 CTTAATGTACGACCGTCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCCGGA 7927 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || | || |||||| || | || || | ||| Sbjct 7928 GGGATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTATCAATCGAGTCGGATGGTTCA 7987 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||||||||||| || || || ||||| | || || ||||| Sbjct 7988 ACATCCAAGGTAATGGTTTTTCCCGTCAAAGTTTTGACAAAGATTTGCAT 8037 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | |||||| ||||||||||| |||| || ||||| ||||| || ||||| ||| Sbjct 8339 TCTTCGAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGGTCTGGTGGGATGCCTTCCTTA 8398 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || || | |||||| ||| || | || || | ||| || || | ||||| Sbjct 8399 TCTTGGATCTTTTGTTTTACGTTATCAATCGAGTCCGAAGGTTCGACATCCAATGTAATT 8458 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || || | ||| || ||||| Sbjct 8459 GTCTTGCCGGTCAACGTCTTTACGAAAATTTGCAT 8493 >seq2584 Length=5567 Score = 113 bits (124), Expect = 8e-20 Identities = 217/312 (70%), Gaps = 10/312 (3%) Strand=Plus/Plus Query 39417 GAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCT 39476 ||||| | ||| ||||| | | ||| ||||| ||||||||| |||||| || ||| Sbjct 3526 GAATAAACTTCTGAATGAATATTTTCGATAGCAATTTGAAATCCATAAAAACATCTAGCT 3585 Query 39477 TCTGAATACT-GAACTTC---GGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACC 39532 || | |||| | ||||| |||||| | || | | ||||| ||| ||||||||| Sbjct 3586 TCAGG-TACTTGTACTTCATTGGAAAA-ATTCATGG--CCAAATTTTCATTTACAATACC 3641 Query 39533 ATCAGATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAA 39592 ||| |||||||| || ||||| || |||| ||||||| | |||||| || | | Sbjct 3642 ATCCGATGCTGCAAAAAATGCCAATACATGGGTAATAAAGAATCGTTCATTGTCCGTAAG 3701 Query 39593 ATTTTCCCAAGATTCAAGATCGTTTGATAA-ATCTACTTCTTCTATTGTCCAAAAAGATG 39651 ||| |||| || | ||| | || || ||||| ||||||| ||||||||| | Sbjct 3702 TTTTGTCCAATCTTTCATATC-ATGGACAAGATCTAATTCTTCTGCAGTCCAAAAACTAG 3760 Query 39652 CTACGGATTTTTTATACATTTGATATATATCAAAATGTTCAATGGGAAATAACACATATC 39711 || | | ||| |||||||||| | | ||| |||| ||| ||||| | |||| ||| Sbjct 3761 CTTCAGCTTTCTTATACATTTCCCACACATCTGTGTGTTGAATAGGAAAAAGCACAAATC 3820 Query 39712 GTTTAGTATTTT 39723 | || | |||| Sbjct 3821 GATTTGGGTTTT 3832 >seq419 Length=23932 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | |||||||||||||||||| | | ||||| || || || || ||||| || Sbjct 23668 TCTTCAAGTTGTTTACCAGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCTTG 23609 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || || | || || || || | ||| || | ||| || || ||||||||| Sbjct 23608 TCTTGAATCTTTTGCTTGACGTTGTCAATGGAATCCGATGGTTCGACATCGAGAGTAATG 23549 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || ||||| || | ||| || ||||| Sbjct 23548 GTCTTACCCGTCAATGTCTTCACGAAGATTTGCAT 23514 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | ||| || || ||||| || | | ||||| |||||||| || ||||| || Sbjct 23896 TCTTCGAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTG 23837 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || || | || ||||| |||| ||| || | ||| || || || |||||| Sbjct 23836 TCTTGGATCTTTTGCTTGACATTGTCAATAGAATCCGAAGGTTCGACATCGAGGGTAATG 23777 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| || ||||| || | || || ||||| Sbjct 23776 GTTTTACCCGTCAATGTCTTGACAAAGATTTGCAT 23742 Score = 84.2 bits (92), Expect = 4e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || ||||| || |||| || || ||||| || || |||| |||| |||| || Sbjct 23266 ACCAAATGCAATGTAGATTCCTTTTGGATATTGTAGTCGCTCAAAGTTCGTCCGTCTTCG 23207 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 | |||||||||||||| || | | ||||| || || || || ||||| |||||||| Sbjct 23206 AGCTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCCTTATCTTGA 23147 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 || || | ||| || || || | || || | ||| || || || || || || ||| Sbjct 23146 ATCTTTTGTTTCACGTTGTCGATGGAGTCCGATGGTTCGACGTCAAGTGTGATCGTCTTA 23087 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || |||| || || ||||| Sbjct 23086 CCGGTCAAAGTCTTAACAAAGATTTGCAT 23058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905075661371400