Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq224 228 2e-54 seq2087 120 9e-22 seq2384 105 2e-17 seq2069 93.3 1e-13 seq1034 87.8 5e-12 seq2660 86.0 2e-11 seq3480 84.2 6e-11 >seq224 Length=84125 Score = 228 bits (252), Expect = 2e-54 Identities = 794/1213 (65%), Gaps = 46/1213 (4%) Strand=Plus/Minus Query 155328 TAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTCAGATGTAAATGCGATA 155387 ||||| || |||||||| | |||||| | | || || || ||||| ||| | |||| Sbjct 28243 TAAATAGTTTCAAAGATTTGAATATTGAGTTTCTTGGCTTCAGCAGATTCAAAAG-GATA 28185 Query 155388 TCCATCTTGAA-AAATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCT 155446 || ||| ||| | || || | || ||||| |||||||| | || ||||| | Sbjct 28184 ACCCATGAGAATAAAGGCATCAGCAAGCCCTTGAACACCAATACCAATAGGACGATGACG 28125 Query 155447 GTAATTGCTCCTGCTTGTCTTCTTGTTT-GGGTAAAAATTCACATCAATAATGTTATTTA 155505 |||||| | | || |||||| | ||||| | || | ||||| | || |||| Sbjct 28124 CATATTGCTTC-GTTTAGCTTCTTCAATAGGGTAGTAGTTGATTTCAATCACTTTGTTTA 28066 Query 155506 AATTT---GTAACCAATACCTTGGTTACGTC-TGCTAATTTCACATAGTCAAATGTTTTA 155561 |||| ||||| | | ||||| | | ||| |||| | |||||||| | Sbjct 28065 AATTGCGAGTAACAATT---TTGGTGATTTTATGCAAATTGGTAA-AGTCAAATAC---A 28013 Query 155562 TCCTCATTTACAAACATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTG 155621 | ||||| ||||| | |||| |||| || |||| ||| || || || | | | Sbjct 28012 CCATCATTGACAAATTTTGAAAGAGCAATCGATGCCAAATTGCACACAGC---CACTTCA 27956 Query 155622 TCGTCGCTG---TATTCTACAATCTCACAGCACAGGTTAGAACTC---TTGATGGTGCCT 155675 || | ||| ||||| | || |||||||||| |||| ||| || || || ||| Sbjct 27955 TCTTTGCTTGTATATTCGATAACTTCACAGCACAAGTTA---CTCGATTTAATAGTACCT 27899 Query 155676 AAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCT 155735 || || | ||||| ||||| || |||||||| ||||| | || ||||| || || Sbjct 27898 AAGTTTTGTTGGTTCGATTTGGAATTGCAAGCATCTTTGTACAACATATATGGTGTACCA 27839 Query 155736 GTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTG 155795 || || || || | || ||||| | ||| | | | || || ||| ||| Sbjct 27838 GTTTCGATTTGAGAATCGAGAATGGCAAACCATAATTGCTGAGCCTTGATTGTCTTTCGA 27779 Query 155796 TATCTGCCTTCCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCA 155855 | ||||| || ||| |||| | |||| | | | |||| || | ||||| Sbjct 27778 GCACGACCTTCAGATTCAAATTTGGTGTACAAAGCTTCAAATTCCTTGCCCCAGCAATCT 27719 Query 155856 CTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGC 155915 || |||| | || |||||||| || |||| ||| | |||||| Sbjct 27718 TGCAAGCCAGAAGCTTCATTTGGGCAAAAAAGACTCCAATCACCATTTGCTTCGACACGC 27659 Query 155916 TCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGC-CTTTG-ACTCCT 155973 | |||||| | |||| ||| | ||||| || || || | || | || | | | Sbjct 27658 TTCATAAACAAATCAGGGATCCACAAGGCATAAAAGAGATCACGAGCACGGTGTAGT--T 27601 Query 155974 CATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCA 156033 ||| ||| ||||| ||| || || || || || |||||||| ||| ||| || | Sbjct 27600 CATTGCCATGATTTTTCTTGAGATCCAAAAACTCAAAAATATCAGCATGCCATGGTTCAA 27541 Query 156034 GATACATAGCAAAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCT 156090 ||||||| ||||| ||| || | ||| ||||| || || ||||| ||||| || | Sbjct 27540 GATACATGGCAAACGAACCCTTACGCTTACCACCACCTTGGTCAACATAGCGAGCGGTAT 27481 Query 156091 TATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT 156150 |||||| || | ||||| ||||| ||||| || || | ||||||||| || ||||||| Sbjct 27480 CATTGAATACTCGAAGCATGGGAATGATACCGTTCGATGAGCCATTGGTACCACGAATAT 27421 Query 156151 GCGAACCA---GATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAG 156207 ||| | | |||||||| ||| || |||| | || |||||||| | |||||| | Sbjct 27420 ---AACTATTTGTTGAGCGAATATTGTGGATATTCACGCCGATACCACCAGCCCATTTGG 27364 Query 156208 AAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTG 156267 |||| ||| |||| || | ||||| ||||||||||||| ||||| || | ||| | Sbjct 27363 AAATACAAGCACATTGTTTCAAAGTATCATAAATACCTTCAATCGAATCGTCCTTCATGG 27304 Query 156268 ATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTG 156327 | ||| |||| || ||||| || ||||| || ||||| ||||| || ||||||| Sbjct 27303 CCAAAAGAAAGCAAGACGACAATTGTGGACGTGGAGTACCAGCATTGAAAAGAGTAGGTG 27244 Query 156328 TTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTC-TCAAGA 156386 | ||||| | || || | | | ||| || || || || ||| || || | ||| | Sbjct 27243 TAGCATGGGTGAAGAACATTTGACTCATGTATTCATAAGTGTCC-AAAGCTCCAGCAATA 27185 Query 156387 TTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATC 156446 | ||||||| | || || | ||| ||| |||||||| || || |||| | Sbjct 27184 TCTTCTTTATGAATACCAACAGCAACACGCATGATCATGTGCTGAGGTCGTTC-ACAAAC 27126 Query 156447 -ACTCCATCAATTCGCAGAAGGTATGCGC-GTTCCAGAGTTTTAAACCCGAAATAATCAA 156504 ||||| | | | || | || || | ||||| ||||||||| || || |||||| Sbjct 27125 TTTTCCATTTACTTGAAGCAAATA-GCTCTTTTCCAAAGTTTTAAATCCAAAGTAATCAT 27067 Query 156505 ACAGAAAATCACG 156517 | ||||||||| Sbjct 27066 ATTCAAAATCACG 27054 >seq2087 Length=27267 Score = 120 bits (132), Expect = 9e-22 Identities = 219/313 (70%), Gaps = 7/313 (2%) Strand=Plus/Plus Query 106901 TTTTTCATAGCAAAAGACGAACTCATACCATAGAAAAACTTGAACTTTTTACCATCTTCC 106960 ||||||||||| || |||||||||||||| || |||||| ||| | || Sbjct 5336 TTTTTCATAGCTGTCGATGAACTCATACCATAAAAGCGTTTGAACATTTGTCGATTGATT 5395 Query 106961 TCAATTAACTTACCTGGATTTTCATCGTGTCCCGCAAAGACACCGCCAACCATTACGAAA 107020 |||| || | ||| | ||||||| || || |||| | || |||| ||| || ||| Sbjct 5396 TCAAGTACTTCACCACCACTTTCATCATGACCAGCAAGCATTCCACCAAGCATAACAAAA 5455 Query 107021 TCAGCCCCGCCACCGAATGCTTTAGCCATATCACCAGGGCAAGTAATTCCACCATCACTA 107080 ||||| || |||| |||||||| | | ||||||||| |||||| |||||| || | Sbjct 5456 TCAGCACCAGCACCAAATGCTTTGGAAACATCACCAGGACAAGTACATCCACCGTCTGAA 5515 Query 107081 ATAATATAAGTT--TTATCGATGCG-AG-ATTCGCACGCCTCTAATACACAAGAGAGTTG 107136 || | || | | | | | ||| | || || |||| || |||||| ||| | ||| Sbjct 5516 ATGACATGACCTCGTAAACCATGAGCAGCATCAGCAC-ATTCCAATACAGCAGACAATTG 5574 Query 107137 GGGCATA-CCAATACCTGTTTGAATTCTTGTAGTGCAAGCACTTCCACCACCGATACCAA 107195 || ||| |||| ||| ||||| ||| ||||||||| || ||| ||| ||||||| Sbjct 5575 AGG-ATATCCAACACCAGTTTGTTTTCGTGTAGTGCAGACAGATCCTGGACCAATACCAA 5633 Query 107196 CTTTAACAATATC 107208 ||||| |||||| Sbjct 5634 TTTTAATAATATC 5646 >seq2384 Length=6284 Score = 105 bits (116), Expect = 2e-17 Identities = 181/260 (70%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 302590 AAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACA 302649 |||||||| || |||||||| ||| | || || || || |||||||| ||||| || Sbjct 2935 AAACGACGTTGGATATAACCTGTTTCGGCCGTCTTGACGGCAGTATCAATAAGACCTTCA 2994 Query 302650 CGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTC 302709 ||||| |||||||| |||||||| | |||| || | ||| || | | ||| | Sbjct 2995 CGACCCCCCATAGCGTGGAAGAAGAATTCTTGTGGAGTCAAACCCTTAAGATAAGAGTTT 3054 Query 302710 TCAACGAAACCACGCGCCTCGGG--CGA-ATCGTCGAACTTGGTAAAGTGTGGCAGGGTC 302766 || || || ||||| | || || | | ||| || ||| | | || |||| || Sbjct 3055 TCGACAAACCCACGAGATTCAGGTCCAAGATCATCT---TTGCCATAATGCGGCAATGTT 3111 Query 302767 CTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAA 302826 |||| | | | ||||| |||||||| || || || ||||| || || || | || | | Sbjct 3112 CTGTGGTTAAACCCGTAAGGGATACGTTTGCCTTCTACGTTTTGTTGCCCGACACAAGCA 3171 Query 302827 ATCATCTGCGAAATATTTAA 302846 || ||||| ||||||||||| Sbjct 3172 ATAATCTGGGAAATATTTAA 3191 Score = 89.7 bits (98), Expect = 2e-12 Identities = 110/150 (73%), Gaps = 3/150 (2%) Strand=Plus/Plus Query 301815 AATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAA 301874 |||||||| | ||| || |||||| | |||||||| ||| | | ||||| || | Sbjct 2106 AATTTCTTTTAAACGAGGTACACCAAGTGTTACGTT---CTTTGCAGACACACCGGCGTA 2162 Query 301875 GTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCAT 301934 |||||||||||||| || | ||| |||| ||||| ||||| ||| || |||| | Sbjct 2163 GTGGAAAGTATTCAATGTCATTTGTGTAGCAGGCTCCCCAATCGATTGGGCAGCAACGAC 2222 Query 301935 ACCAACCATTTCTCCTGGTGCTACAATAGA 301964 |||| ||||||| || | ||||||| ||| Sbjct 2223 ACCAGCCATTTCGCCAGCAGCTACAAGAGA 2252 >seq2069 Length=6660 Score = 93.3 bits (102), Expect = 1e-13 Identities = 178/262 (68%), Gaps = 8/262 (3%) Strand=Plus/Minus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 ||| |||| ||||||| || |||||| || || | |||||||| || | || | || Sbjct 4718 GGCAATAATACCACACAAATCACACACGTGCACACGATAAGCATCCGAGTTGGCAAAAAG 4659 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 ||| || | ||| | | ||| || ||||||| ||| || || ||||||||||| Sbjct 4658 ACGATCCATCAAGAAATTGGCCGAACCATGCGAAATCAAACAGTCTCGTTCCATTTCACC 4599 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 | ||| | ||| || || ||||| | ||| || ||| ||||| || | || || Sbjct 4598 CATACGCAAACCGCCTTCACGAGCACGACCTTCCAAAGGTTGACGCGTTAACATAGTCAC 4539 Query 251583 AGGACC----GATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGT 251638 ||||| ||| ||| | || |||||| | ||||| ||||| | ||| || | Sbjct 4538 TGGACCACGAGATCGAGAG----TGAATCTTATCGTCGACCATGTGCTTCAAACGTTGAT 4483 Query 251639 AGAATGCGGGACCGATGAAGAT 251660 | |||| ||||||||||| || Sbjct 4482 AAAATGTAGGACCGATGAAAAT 4461 >seq1034 Length=11077 Score = 87.8 bits (96), Expect = 5e-12 Identities = 69/80 (86%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 410494 TGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGGGTTCGAGTCCCGTCG 410553 || ||||||||||||||| |||||||| ||||||| ||||||||||||||||||| || Sbjct 449 TGGCGCAATGGATAGCGTATCAGACTTCGAATCTGGGGGTTGCGGGTTCGAGTCCCG-CG 391 Query 410554 T-GGGTAAtttttttAATTT 410572 | | ||| | |||||||||| Sbjct 390 TCGCGTACTCTTTTTAATTT 371 >seq2660 Length=4874 Score = 86.0 bits (94), Expect = 2e-11 Identities = 65/74 (88%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 410494 TGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGGGTTCGAGTCCCGTCG 410553 || ||||||||||||||| |||||||| ||||||| ||||||||||||||||||| || Sbjct 4075 TGGCGCAATGGATAGCGTATCAGACTTCGAATCTGGGGGTTGCGGGTTCGAGTCCCG-CG 4017 Query 410554 T-GGGTAAtttttt 410566 | | |||||||||| Sbjct 4016 TCGAGTAATTTTTT 4003 >seq3480 Length=2378 Score = 84.2 bits (92), Expect = 6e-11 Identities = 80/99 (81%), Gaps = 4/99 (4%) Strand=Plus/Minus Query 410475 TGTTATTTATGTGCCCGCGTGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTT 410534 |||||| || ||| || || ||||||||||||||| |||||||| ||||||| ||| Sbjct 235 TGTTAT--ATCTGCTCGGCTGGCGCAATGGATAGCGTATCAGACTTCGAATCTGGGGGTT 178 Query 410535 GCGGGTTCGAGTCCCGTCGT-GGGTAAtttttttAATTT 410572 |||||||||||||||| ||| | ||||| || | |||| Sbjct 177 GCGGGTTCGAGTCCCG-CGTCGAGTAATGATTATGATTT 140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471717032083221