Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq419 111 2e-19 seq5008 109 9e-19 seq580 109 9e-19 seq2092 100 4e-16 >seq419 Length=23932 Score = 111 bits (122), Expect = 2e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || |||| || || || || || || || || |||| || |||| | | Sbjct 23287 TGCAAATTTTTGTAAAGACGTTGACCGGTAAGACGATCACACTTGACGTCGAACCTTCGG 23346 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | | ||| | ||||| ||| | || || ||| || ||||||||||| || ||||||| Sbjct 23347 ACTCCATTGATAATGTTAAACAAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAAC 23406 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||||||||| ||||||||| | || ||| | || |||| || || || | Sbjct 23407 AACGCCTCATTTTTGCCGGTAAACAACTCGAAGATGGCCGTACTTTAAGCGACTACAACA 23466 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||| ||||| || | ||||| || || || Sbjct 23467 TCCAAAAGGAATCTACATTGCATTTGGTCTTGCG 23500 Score = 109 bits (120), Expect = 9e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || ||||| || || || || |||||| | ||||| |||| | Sbjct 23515 TGCAAATCTTCGTGAAGACATTGACGGGTAAGACCATTACTCTCGATGTCGAACCATCGG 23574 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || | ||| | || || || | || || ||| || ||||||||||| || ||||||| Sbjct 23575 ATTCCATTGACAACGTCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAAC 23634 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||||||||| ||||||||| | || ||| | || | | || || || | Sbjct 23635 AACGCCTCATTTTTGCTGGTAAACAACTTGAAGATGGCCGCACCCTTAGTGACTACAACA 23694 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| ||||||||| | || || || Sbjct 23695 TCCAAAAGGAATCGACTCTTCACTTGGT 23722 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || ||||| || || ||||| ||||| | ||||| |||| | | Sbjct 23743 TGCAAATCTTTGTCAAGACATTGACGGGTAAAACCATTACCCTCGATGTCGAACCTTCGG 23802 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || ||||| | ||||| || | || || ||| || |||||||||||||| ||||||| Sbjct 23803 ATTCTATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATTCCACCTGATCAAC 23862 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 || | ||||| ||||| || || ||| | || ||| Sbjct 23863 AACGTCTCATCTTTGCCGGCAAGCAACTCGAAGAT 23897 >seq5008 Length=14815 Score = 109 bits (120), Expect = 9e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || ||||| ||||| || || || || | ||||| |||| | | Sbjct 6223 TGCAGATCTTCGTCAAGACATTGACAGGCAAGACCATCACGTTGGATGTCGAACCTTCGG 6282 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || | ||| | ||||| || | || || ||| || ||||||||||| || ||||||| Sbjct 6283 ATTCGATTGATAATGTCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAAC 6342 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || |||||||| |||||| | || ||| | || || | ||||| || | Sbjct 6343 AACGTTTGATCTTTGCAGGCAAACAACTTGAAGATGGACGTACTTTGAGCGATTACAACA 6402 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||||||||| ||| | ||||| || Sbjct 6403 TCCAAAAAGAATCTACTCTTCATTTGGT 6430 >seq580 Length=37562 Score = 109 bits (120), Expect = 9e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || ||||| || ||||| || ||||| |||| || |||| | | Sbjct 8264 TGCAAATTTTCGTCAAGACATTGACTGGAAAGACTATTACACTTGACGTGGAACCTTCAG 8205 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | | ||| | ||||| ||| | || || ||| ||||||||||| || || ||||||| Sbjct 8204 ACTCAATTGATAATGTGAAACAAAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAAC 8145 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| || |||||| | || ||| | | | | | || || || | Sbjct 8144 AACGTTTAATTTTTGCTGGCAAACAACTCGAAGATGGTCGTTCTCTCAGTGACTACAACA 8085 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || || ||||| ||| | ||| |||| || || ||| | || |||| Sbjct 8084 TTCAGAAGGAATCTACTCTACATCTAGTCTTGCGTTTACGTGGTGGTA 8037 >seq2092 Length=13256 Score = 100 bits (110), Expect = 4e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| |||| || || || || || || || || | ||||| |||| | | Sbjct 11696 TGCAGATCTTCGTAAAGACCTTGACGGGTAAGACCATCACATTGGATGTCGAACCTTCGG 11755 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || | ||| | ||||| || | ||||| ||| || ||||||||||| || ||||||| Sbjct 11756 ATTCGATTGATAATGTCAAGCAAAAAATTCAAGACAAGGAAGGCATTCCTCCAGATCAAC 11815 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| || || ||| | || ||| | | || || | ||||| || | Sbjct 11816 AACGTTTGATCTTTGCCGGCAAGCAACTCGAAGATGGTCGCACTTTGAGCGATTACAACA 11875 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| ||||||||| | || || || Sbjct 11876 TCCAAAAGGAATCGACTTTGCACTTGGT 11903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786113992182360