Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq580 149 5e-31 seq5008 136 3e-27 seq2232 132 4e-26 seq419 114 1e-20 seq4831 86.0 5e-12 >seq580 Length=37562 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | |||||| || ||||||||||| |||||||| ||||||||||| ||||| Sbjct 8267 CCACCACGCAAACGTAGGACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCACTG 8326 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| |||||||||||||||||| | ||||||| |||||| || || || Sbjct 8327 AGAGTGCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGGTCTGGTGGG 8386 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || || ||||| | |||||||| || | || | | ||| ||| |||| || Sbjct 8387 ATGCCTTCCTTATCTTGGATCTTTTGTTTTACGTTATCAATCGAGTCCGAAGGTTCGACA 8446 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || ||||| || || || || || || || ||||| Sbjct 8447 TCCAATGTAATTGTCTTGCCGGTCAACGTCTTTACGAAAATTTGCAT 8493 Score = 132 bits (146), Expect = 4e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||||| || | ||| || || ||||| || |||||||| || || | | ||| Sbjct 8048 AAACGCAAGACTAGATGTAGAGTAGATTCCTTCTGAATGTTGTAGTCACTGAGAGAACGA 8107 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| |||||||||||||||||| | || || | ||| ||||| || || || || ||| Sbjct 8108 CCATCTTCGAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGATCTGGAGGGATGCCTTCT 8167 Query 29689 TTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 |||||||| | |||||||| ||| | || | | ||| ||| |||| || ||||| || Sbjct 8168 TTGTCTTGAATCTTTTGTTTCACATTATCAATTGAGTCTGAAGGTTCCACGTCAAGTGTA 8227 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || ||||| || || || || || || ||||| Sbjct 8228 ATAGTCTTTCCAGTCAATGTCTTGACGAAAATTTGCAT 8265 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 ||||| | | ||||| ||||| || || || ||||| ||||||||||| || || | Sbjct 7811 CCTCCACGAAGACGCAATACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCACTT 7870 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 ||| || ||| || || |||||||| ||||| | ||||| | ||| |||||||| || Sbjct 7871 AAT-GTACGACCGTCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCCGGAGG 7929 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || |||||||| | ||||| |||||| | || | | ||| || |||| || Sbjct 7930 GATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTATCAATCGAGTCGGATGGTTCAAC 7989 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || ||||| || || || ||||| ||||| || ||||| Sbjct 7990 ATCCAAGGTAATGGTTTTTCCCGTCAAAGTTTTGACAAAGATTTGCAT 8037 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||||| |||||| || | || ||||| ||||| || || || || || || || Sbjct 8504 AAACGCAACACCAAGTGCAAGGTCGATTCCTTTTGGATATTGTAGTCACTAAGAGTACGT 8563 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || | ||||||||||||| | ||||| | ||| ||||| || |||||||| || Sbjct 8564 CCATCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCC 8623 Query 29689 TTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 |||||||| | |||||| ||||| | || | | ||| ||| |||| || || | || Sbjct 8624 TTGTCTTGAATTTTTTGCTTGACGTTATCAATCGAGTCCGAAGGTTCCACGTCCAACGTA 8683 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || | || || ||||| || ||||| Sbjct 8684 ATTGTCTTTCCGGTGAGTGTCTTGACAAAGATTTGCAT 8721 >seq5008 Length=14815 Score = 136 bits (150), Expect = 3e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| || ||||||||||| || ||||||||||| ||||| ||||| | ||| | | || Sbjct 6437 ACGAAGGACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCGCTCAAAG-TACGTC 6379 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || ||||||||||| ||| | ||||| | ||| ||||| || ||||| || || | Sbjct 6378 CATCTTCAAGTTGTTTGCCTGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCT 6319 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||||| | ||||| |||||| | || | | || ||| |||| || || | || | Sbjct 6318 TGTCTTGAATCTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGACATCCAACGTGA 6259 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || ||||| || || || || || || |||||||| Sbjct 6258 TGGTCTTGCCTGTCAATGTCTTGACGAAGATCTGCAT 6222 >seq2232 Length=15861 Score = 132 bits (146), Expect = 4e-26 Identities = 163/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||| || ||||| || | || ||||| ||||||||||| ||||| | ||| || ||| Sbjct 611 ACGAAGGACCAAGTGCAAAGTCGATTCCTTTTGAATGTTGTAATCGCTCAA-AGTACGAC 553 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| |||||||| ||||| ||| | ||||| | ||| ||||| || |||||||| || | Sbjct 552 CATCTTCGAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCT 493 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||| || | ||||| ||||| | || | | ||| ||| | ||||| || | || | Sbjct 492 TGTCCTGGATCTTTTGCTTGACGTTGTCAATCGAGTCCGAAGGCTCTACATCCAACGTGA 433 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || |||||||| || || || || || |||||||| || Sbjct 432 TGGTCTTGCCAGTCAATGTCTTGACGAAAATCTGCATATT 393 >seq419 Length=23932 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| |||||||| | || ||||| ||||| ||||| || || | || || Sbjct 23501 ACGCAAGACCAAATGCAATGTAGATTCCTTTTGGATGTTGTAGTCGCTTAAAGTACGGCC 23442 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||||||||| || ||| | || | | ||| ||||| || ||||| || || || Sbjct 23441 ATCTTCGAGTTGTTTACCGGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCTT 23382 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | |||||||| ||| | || | | ||| ||| |||| || ||||| || || Sbjct 23381 GTCTTGGATCTTTTGTTTAACATTATCAATGGAGTCCGAAGGTTCGACGTCAAGTGTGAT 23322 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || ||||| || ||||| Sbjct 23321 CGTCTTACCGGTCAACGTCTTTACAAAAATTTGCAT 23286 >seq4831 Length=17254 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCC-GCAATGGTGCGAGAATCATCGAGTTG 29642 || ||||| |||||| ||||||| ||||||||| |||||| | || ||| || ||||| Sbjct 11398 TGTAGCGTTGATTCTCTTTGAATATTATAATCCCGCAATGTT-CGTCCATCTTCTAGTTG 11456 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 |||||||||| |||| | || ||||| || ||||| || ||||| ||||| Sbjct 11457 TTTGCCAGCAAATATGAGTCGCATTTGATCAGGAGGAATGCCTTCTTTTTCTTG 11510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385194162316953