Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq1188 91.5 2e-13 seq2861 86.0 8e-12 >seq1188 Length=10735 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||||||||| |||| ||||| | |||| |||| |||||| ||| Sbjct 3410 TTCCTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAATT 3469 Query 8717 CCCCGACGAGGAG 8729 ||| |||| |||| Sbjct 3470 CCCGGACGGGGAG 3482 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||||||||| |||| ||||| | |||| |||| |||||| ||| Sbjct 7522 TTCCTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAATT 7463 Query 8717 CCCCGACGAGGAG 8729 ||| |||| |||| Sbjct 7462 CCCGGACGGGGAG 7450 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGG-TAGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||| |||||| |||| ||||| | |||| |||| |||||| |||| Sbjct 3411 TCCTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAATTC 3470 Query 11789 CCCGACGAGGAG 11800 || |||| |||| Sbjct 3471 CCGGACGGGGAG 3482 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGG-TAGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||| |||||| |||| ||||| | |||| |||| |||||| |||| Sbjct 7521 TCCTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAATTC 7462 Query 11789 CCCGACGAGGAG 11800 || |||| |||| Sbjct 7461 CCGGACGGGGAG 7450 >seq2861 Length=10369 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | |||| |||| |||||| |||| Sbjct 1739 TCCTCGTTAGTATAGTGGTCAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAATTC 1798 Query 8718 CCCGACGAGGAG 8729 || |||| |||| Sbjct 1799 CCGGACGGGGAG 1810 Score = 82.4 bits (90), Expect = 1e-10 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | |||| |||| |||||| |||| Sbjct 1739 TCCTCGTTAGTATAGTGGTCAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAATTC 1798 Query 11789 CCCGACGAGGAG 11800 || |||| |||| Sbjct 1799 CCGGACGGGGAG 1810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652801279733520