Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2232 116 4e-21 seq419 111 2e-19 seq580 105 6e-18 seq2092 102 8e-17 seq5008 96.9 3e-15 >seq2232 Length=15861 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || || || || |||||||||| || || ||| | || ||||| |||||||| Sbjct 592 GTCGATTCCTTTTGAATGTTGTAATCGCTCAAAGTACGACCA-TCTTCGAGTTGCTTGCC 534 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || || || || ||||| || ||||||||||| |||||||||||| Sbjct 533 GGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTTTGCTT 474 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| || ||| | ||||| || || | |||| ||| ||||| |||| || Sbjct 473 GACGTTGTCAATCGAGTCCGAAGGCTCTACATCCAACGTGATGGTCTTGCCAGTCAATGT 414 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 413 CTTGACGAAAATCTGCAT 396 >seq419 Length=23932 Score = 111 bits (122), Expect = 2e-19 Identities = 155/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||| || || || ||||||||||||| || || ||| | || ||||| Sbjct 23035 AAATGCAATGTGGATTCCTTTTGGATATTGTAATCGCTCAGGGTACGACCA-TCTTCGAG 22977 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| || | || || || || || || ||||| ||||||||||| || || Sbjct 22976 TTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCCTTATCTTGAAT 22917 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||||||||||| | |||| | ||| | ||||| || |||| |||| || || || Sbjct 22916 CTTTTGCTTGACGTTGTCAATGGAGTCCGATGGCTCAACATCGAGCGTGATTGTCTTCCC 22857 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGGCTTATT 133668 || || || || || || || ||||||| || || Sbjct 22856 CGTGAGTGTCTTGACAAAGATTTGCATGGTTTCTT 22822 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || || || || || ||||| |||| | || | | | || ||||| Sbjct 23491 AAATGCAATGTAGATTCCTTTTGGATGTTGTAGTCGCTTAAAGTACGGCCA-TCTTCGAG 23433 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || || ||||||| || || || || ||||| |||||||||||||| ||| Sbjct 23432 TTGTTTACCGGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGGAT 23373 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||||| || | | |||| | ||| | || || ||||| | |||| || || || Sbjct 23372 CTTTTGTTTAACATTATCAATGGAGTCCGAAGGTTCGACGTCAAGTGTGATCGTCTTACC 23313 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 ||||| || ||||| ||||| |||||| Sbjct 23312 GGTCAACGTCTTTACAAAAATTTGCATG 23285 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 133470 TCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTA 133528 || || || || ||||| |||| | ||| | | | || ||||| |||||||| || | Sbjct 23932 TCCTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCA-TCTTCGAGTTGCTTGCCGGCAAA 23874 Query 133529 AATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTG 133588 ||||| || || || || || || |||||||||||||| |||||||||||||| | Sbjct 23873 GATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATT 23814 Query 133589 CTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTAC 133648 |||| | || | || || || |||| ||| | |||||| || |||| || || || Sbjct 23813 GTCAATAGAATCCGAAGGTTCGACATCGAGGGTAATGGTTTTACCCGTCAATGTCTTGAC 23754 Query 133649 GAAAATCTGCATG 133661 || || |||||| Sbjct 23753 AAAGATTTGCATG 23741 >seq580 Length=37562 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || || || || || ||| |||| | || || || || ||||||||||||||||| Sbjct 7882 GTCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCCGGAGGGATGCCTTCCTT 7941 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||||||||||| | |||| || ||||| || || || || | ||| | Sbjct 7942 GTCTTGGATCTTTTGCTTGACATTATCAATCGAGTCGGATGGTTCAACATCCAAGGTAAT 8001 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||| || |||| |||||| || || || ||||| Sbjct 8002 GGTTTTTCCCGTCAAAGTTTTGACAAAGATTTGCAT 8037 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||| || || || || |||||||| | | ||| | | | || ||||| Sbjct 8288 AAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCACTGAGAGTGCGGCCA-TCTTCGAG 8346 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || ||||| || |||| | || |||||||| || |||||||||||||| || ||| Sbjct 8347 TTGTTTGCCAGCAAAAATCAATCGTTGCTGGTCTGGTGGGATGCCTTCCTTATCTTGGAT 8406 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||||| || | | |||| || ||| | || || || || | || | || ||||| Sbjct 8407 CTTTTGTTTTACGTTATCAATCGAGTCCGAAGGTTCGACATCCAATGTAATTGTCTTGCC 8466 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || ||||||||||| ||||| Sbjct 8467 GGTCAACGTCTTTACGAAAATTTGCAT 8493 Score = 82.4 bits (90), Expect = 7e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGC 133514 ||||| || || || ||||| || ||||| || | | | | |||| || ||||| Sbjct 8062 ATGTAGAGTAGATTCCTTCTGAATGTTGTAGTCACTGA--GAGAACGACCATCTTCGAGT 8119 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || ||||| || |||| | || || || || |||||||||||||| ||||| ||| Sbjct 8120 TGTTTGCCAGCAAAAATTAAACGTTGTTGATCTGGAGGGATGCCTTCTTTGTCTTGAATC 8179 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||||| || | | |||| | ||| | || |||||||| | || | || || || Sbjct 8180 TTTTGTTTCACATTATCAATTGAGTCTGAAGGTTCCACGTCAAGTGTAATAGTCTTTCCA 8239 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || |||||||| ||||| Sbjct 8240 GTCAATGTCTTGACGAAAATTTGCAT 8265 >seq2092 Length=13256 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || || || || |||||||||| || ||| ||| | || ||||| |||||||| Sbjct 11891 GTCGATTCCTTTTGGATGTTGTAATCGCTCAAAGTGCGACCA-TCTTCGAGTTGCTTGCC 11833 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || || || || ||||| |||||||||||||| || |||||||| Sbjct 11832 GGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATTTTTTGCTT 11773 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| || || | || || || || | |||| ||| || || |||| || Sbjct 11772 GACATTATCAATCGAATCCGAAGGTTCGACATCCAATGTGATGGTCTTACCCGTCAAGGT 11713 Query 133643 TTTTACGAAAATCTGCAT 133660 |||||||| |||||||| Sbjct 11712 CTTTACGAAGATCTGCAT 11695 >seq5008 Length=14815 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || ||||| || || |||||||||| || || | | | || || || Sbjct 6427 AAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCGCTCAAAGTACGTCCA-TCTTCAAG 6369 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || ||||| || | || | || || || || ||||| |||||||||||||| || Sbjct 6368 TTGTTTGCCTGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAAT 6309 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||||||||||| | |||| || || | || || || || | |||| ||| ||||| Sbjct 6308 CTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGACATCCAACGTGATGGTCTTGCC 6249 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || ||||| |||||||| Sbjct 6248 TGTCAATGTCTTGACGAAGATCTGCAT 6222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483388573960920