Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq224 259 1e-63 seq2584 123 6e-23 seq1925 89.7 1e-12 >seq224 Length=84125 Score = 259 bits (286), Expect = 1e-63 Identities = 591/881 (67%), Gaps = 9/881 (1%) Strand=Plus/Plus Query 110285 TCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAAC-GTGCTTATTTACTTC 110343 |||||| | ||| ||| || ||||| || |||||| | ||| | ||| |||| |||| Sbjct 27053 TCGTGATTTTGAATATGATTACTTTGGATTTAAAACTTTGGAAAAGAGCT-ATTTGCTTC 27111 Query 110344 GTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTA 110403 || ||||| | | |||||| ||||| |||||| | | |||||||| |||||| Sbjct 27112 AAGTAAATGGAAAAGTTTGTGAACGACCTCAGCACATGATCATGCGTGTTGCTGTTGGTA 27171 Query 110404 TTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAG 110463 ||||| | | |||||| | | | | || |||||| | ||| ||| | Sbjct 27172 TTCATAAAGAAGATATTGCTGGAGCTTTGGACACTTATGAATACATGAGTCAAATGTTCT 27231 Query 110464 CTATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTT 110523 | |||||||| ||||| || || || || || ||| | ||||||| | |||| Sbjct 27232 TCACCCATGCTACACCTACTCTTTTCAATGCTGGTACTCCACGTCCACAATTGTCGTCTT 27291 Query 110524 GCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAA 110583 |||||||| | | || || || ||||| |||||||||||||||||| || | ||| || Sbjct 27292 GCTTTCTTTTGGCCATGAAGGACGATTCGATTGAAGGTATTTATGATACTTTGAAACAAT 27351 Query 110584 CTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAA 110643 |||| |||||| ||| |||| || || || | | | || |||||||||||| Sbjct 27352 GTGCTTGTATTTCCAAATGGGCTGGTGGTATCGGCGTGAATATCCACAATATTCGCTCAA 27411 Query 110644 -AAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGA 110702 || || | ||| | | || || | || | || | |||| ||| | || Sbjct 27412 CAAATAGTTATATTCGTGGTA-CCAATGGCTCATCGAACGGTATCATTCCCATGCTTCGA 27470 Query 110703 GTCTTCAACGACACTGCAAAATATGTGAATCAA---GGTGGTAAGAGAAATGGCTCATTT 110759 || ||||| || || || ||||| | ||| ||||||||| | || || || ||| Sbjct 27471 GTATTCAATGATACCGCTCGCTATGTTGACCAAGGTGGTGGTAAGCGTAAGGGTTCGTTT 27530 Query 110760 GCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAAT 110819 || || ||||| ||||| |||||| | ||||| ||||| || || || || |||||| Sbjct 27531 GCCATGTATCTTGAACCATGGCATGCTGATATTTTTGAGTTTTTGGATCTCAAGAAAAAT 27590 Query 110820 CAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTA 110879 || || |||| ||| | || |||||| | |||||||| ||||||| | ||||| Sbjct 27591 CATGGCAATGAACTACACCGTGCTCGTGATCTCTTTTATGCCTTGTGGATCCCTGATTTG 27650 Query 110880 TTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCT 110939 || ||||| ||||| ||| |||||| ||| |||| | || || || || || Sbjct 27651 TTTATGAAGCGTGTCGAAGCAAATGGTGATTGGAGTCTTTTTTGCCCAAATGAAGCTTCT 27710 Query 110940 GGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAA 110999 || | ||| | || || || ||||||| | ||| |||| |||| ||| Sbjct 27711 GGCTTGCAAGATTGCTGGGGCAAGGAATTTGAAGCTTTGTACACCAAATTTGAATCTGAA 27770 Query 111000 GGCAAGTTTCGCAAACAAATTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACA 111058 || ||| ||| | | || | ||||| || | ||||| || || || || || Sbjct 27771 GGTCGTGCTCG-AAAGACAATCAAGGCTCAGCAATTATGGTTTGCCATTCTCGATTCTCA 27829 Query 111059 AGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCA 111118 | | |||||||| || || ||||| ||||| |||||| | ||| |||||| || || Sbjct 27830 AATCGAAACTGGTACACCATATATGTTGTACAAAGATGCTTGCAATTCCAAATCGAACCA 27889 Query 111119 AATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGCTGTG 111159 | || ||||| || ||||| || ||||| |||||||||| Sbjct 27890 ACAAAACTTAGGTACTATTAAATCGAGTAACTTGTGCTGTG 27930 >seq2584 Length=5567 Score = 123 bits (136), Expect = 6e-23 Identities = 566/881 (64%), Gaps = 30/881 (3%) Strand=Plus/Minus Query 131432 CTATTTCCAATTAAACATCAC-GATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTT 131490 || ||||| ||| |||| ||| ||||| | || |||||||||||| ||| || || Sbjct 3812 CTTTTTCCTATTCAACA-CACAGATGTGTGGGAAATGTATAAGAAAGCTGAAGCTAGTTT 3754 Query 131491 CTGGACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACCTT 131550 ||||||| ||||| | ||| | | | ||||| | |||||| |||| | || Sbjct 3753 TTGGACTGCAGAAGAATTAGATCTTGTCCATGATATGAAAGATTGGACAAAACTTACGGA 3694 Query 131551 GAATGAAAAAGATTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGGCATTGT 131610 |||||| | ||| || || | || | ||||| || || | | ||||| ||||| Sbjct 3693 CAATGAACGATTCTTTATTACCCATGTATTGGCATTTTTTGCAGCATCGGATGGTATTGT 3634 Query 131611 TATTGAAAATCTTGTTATTAATTTCATTCAA-GAAATTGATATTCCTGAAGTAACATCGT 131669 | ||||||| | | || ||||| | ||| ||| | | | ||||||| | || | Sbjct 3633 AAATGAAAATTTGGCCATGAATTTT-TCCAATGAAGTACAAGTACCTGAAGCTAGATGTT 3575 Query 131670 TCTACACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTATTGATTG 131729 | || ||||||| ||| | ||| ||||||| || | ||||| || | |||| Sbjct 3574 TTTATGGATTTCAAATTGCTATCGAAAATATTCATTCAGAAGTTTATTCGTTGCTCATTG 3515 Query 131730 AGAGTCTTGTTAAAAATGAAGATGATAAAAATAAATTATTTGATG-CTGTAAATAAATTT 131788 | | | | | || | | || ||| || | ||||| | || | ||| || Sbjct 3514 ATACTTATATCAAGGACATTGTGGAAAAAGATCGTGT-TTTGAGGGCTATTGATACGATT 3456 Query 131789 CCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAG---ATGATTCCGCT 131845 ||| | || ||||| |||||||| |||||||| | ||| | ||| ||| Sbjct 3455 CCTTGTGTACAACGTAAAGCTAAATGGGCTCTTAAATGG-TGCAATGGCAAAATT--GCT 3399 Query 131846 AATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCT 131905 | | | | | ||||||| |||||| |||||||||||| ||||||||||| | Sbjct 3398 GCGTATGCAGAACGTATTGTAGCCTTTGCTGCTGTTGAAGGTATTTTCTTTTCAGGATCA 3339 Query 131906 TTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAAT 131965 || || | ||||||||||| ||||| ||||| ||||||||||| | || || || Sbjct 3338 TTTTGCTCGATCTTTTGGCTCAAGAAACGTGGTTTGATGCCTGGTTTAAGCTTTTCGAAC 3279 Query 131966 CAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAA 132025 || | || || | ||||| | | ||| ||| ||||| | || ||| || Sbjct 3278 GAACTTATTTCTCGTGATGAGGGTCTTCATTGTGACTTTGCCTGCCTCATGTATTCCAA- 3220 Query 132026 TTTGCTGAT----AAACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGA 132081 ||| || || ||| | | | |||| | || |||| | || || |||| Sbjct 3219 ---GCTCATCAACAAGCTTTCTAACGAACGTATTCATGAAATTATTGGGGATGCTGTTGC 3163 Query 132082 TATCGAGAAGGAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGA 132141 || || ||| | ||| | | ||| || | || | | ||||| ||||| || | Sbjct 3162 AATTGAAAAGCAATTTGTCTCGGAATCTCTTCCAGTAGAACTCATTGGTATGAA--CTCA 3105 Query 132142 -CTCT-ATGAAGGAGTACATTGAATTCGTTGCTGATCGTTTAATTAACCAA---CTTGGA 132196 |||| ||| || |||||||||||| ||||||||| || |||| |||||| Sbjct 3104 TCTCTCATGTGCGAATACATTGAATTCTGTGCTGATCG---CCTTCTCCAAGCCCTTGGA 3048 Query 132197 TATTCCAAGATTTATAACACCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAA 132256 | ||||| |||| || || | || || | |||||||| || || ||| || Sbjct 3047 GCTACCAAGCTTTACAATGCCAAGAATCCATTCGACTGGATGGACATGATATCTCTTCAA 2988 Query 132257 GGTAAAACGAACTTCTTCGAAAGTCGTGTATCTGAGTACTC 132297 || || || ||||| ||||||| ||||| ||| ||||| Sbjct 2987 GGAAAGACCAACTTTTTCGAAAAGCGTGTCGGTGAATACTC 2947 >seq1925 Length=14366 Score = 89.7 bits (98), Expect = 1e-12 Identities = 130/179 (73%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 279047 AAGACCAATAAATTATATGGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGT 279106 |||| || | ||| | |||||| | || || ||||||||||||| ||||| || | Sbjct 9420 AAGAAAAAGAGATTGCAGGGTATTTCGAAGCTCGATGATGCAAACTTTGCTGGCAGT-GC 9362 Query 279107 AAATCTCAAGAATGTG---CTTTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCG 279163 ||| | | | |||| ||| |||| | || || || ||||| ||| | |||| Sbjct 9361 AAAGAGCCACA-TGTGTACCTTGATTT-TAACCGAAGGTGATTCGGCTAAAGCTCTTGCC 9304 Query 279164 ATTGCTGGTTTATCTGTTATTGGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAA 279222 || ||||||||||||| ||||||||||| | ||||| |||||||||||| | ||||| Sbjct 9303 ATGAGTGGTTTATCTGTTGTTGGTCGTGATTATTATGGTGTATTTCCTTTACGTGGTAA 9245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186731706194013