Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq5008 109 1e-18 seq580 86.0 1e-11 >seq5008 Length=14815 Score = 109 bits (120), Expect = 1e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | ||||| || || ||||| ||||| || ||| ||| || Sbjct 6225 CAGATCTTCGTCAAGACATTGACAGGCAAGACCATCACGTTGGATGTCGAACCTTCGGAT 6284 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || ||||||||||||||||| || ||||| ||| || || ||| Sbjct 6285 TCGATTGATAATGTCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAACAA 6344 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || || || || | ||||||||| | |||||| |||||||||| || Sbjct 6345 CGTTTGATCTTTGCAGGCAAACAACTTGAAGATGGACGTACTTTGAGCGATTACAACATC 6404 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 || ||||| ||||||||||| Sbjct 6405 CAAAAAGAATCTACTCTTCA 6424 >seq580 Length=37562 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || ||||| ||||| || || || ||||| |||||| ||| ||| Sbjct 8718 CAAATCTTTGTCAAGACACTCACCGGAAAGACAATTACGTTGGACGTGGAACCTTCGGAC 8659 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || |||||||| |||||||| || ||||| ||| || || ||| Sbjct 8658 TCGATTGATAACGTCAAGCAAAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAACAA 8599 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || || || || |||||||||||| | ||| | || ||||| || Sbjct 8598 CGTTTGATCTTTGCTGGCAAACAATTGGAAGATGGACGTACTCTTAGTGACTACAATATC 8539 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTG 206382 || || || || || | ||| | || ||| Sbjct 8538 CAAAAGGAATCGACCTTGCACTTGGTGTTG 8509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181740047292693