Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq1264 140 7e-28 seq1768 122 2e-22 seq279 93.3 9e-14 >seq1264 Length=6109 Score = 140 bits (154), Expect = 7e-28 Identities = 283/405 (70%), Gaps = 20/405 (5%) Strand=Plus/Minus Query 298902 ACCAAAAAGAATGCTATTCTCACTGGTGAAGCTGGTGTAGGTAAAACACAAATCATCGAC 298961 ||||| || || | |||| | |||||| ||||||| ||||||||| ||| |||| Sbjct 863 ACCAAGAACAACCCAGTTCTTATCGGTGAACCTGGTGTTGGTAAAACAGCTATCGTCGAA 804 Query 298962 GGGCTTGCACAAGCTATTGCTGATGGTAACGTACCTGAACACCT-GAAAGACGTTGAAAT 299020 || ||||| || ||||| ||||| | || ||||||| | | | || || ||||| Sbjct 803 GGACTTGCTCATCGTATTGTGAATGGTGATGTCCCTGAACTCATTGCTCGATGT-GAAAT 745 Query 299021 TCTTTCACTAAATGTTGGTGCATTGACTGCTGGTACTAAGTATCGTGGTGAATTTGAAGA 299080 | || || || | ||||| |||| ||||||| | ||||| ||||||||||||||||| Sbjct 744 CCACTCTCTTGATATGGGTGCGTTGATTGCTGGTGCCAAGTACCGTGGTGAATTTGAAGA 685 Query 299081 ACGCATC--GACAATTTGCTAAAAGAACTA-AAGAAACGTGAA---AATACTATTGTTTT 299134 | | || | || | | | |||||| || |||||| ||||| || | ||| | || Sbjct 684 AAGACTCAAGGCAGTAT--TGAAAGAAGTACAAGAAA-GTGAAGGCAAAATTATCTTGTT 628 Query 299135 CATTGATGAAATTCATATTATGGTTGGGGCTGGTTCCGCAAGTAATGGTTCTATGGACAT 299194 ||| |||||||| || | || |||| |||||| | || | |||| | |||| || Sbjct 627 CATCGATGAAATGCACTTGATTCTTGGTGCTGGTGCTACAGG---TGGTGCGATGG--AT 573 Query 299195 G-AGC-AATATGCTTAAGCCAGCACTT-TCACGTGGTGAGATTCGTGTAATTGGTGCAAC 299251 | ||| ||| |||| || ||| | ||| | |||||||| | || |||||||| || Sbjct 572 GCAGCTAATTTGCTCAAACCA-CTCTTGGCTCGTGGTGAATTACGATGCATTGGTGCCAC 514 Query 299252 AACATATGATGAATATCGTAAAAATATCGAGAAAGATAGTGCATT 299296 || | || ||||| || ||| | | ||||| || | ||||| Sbjct 513 CACCTTGGAAGAATACCGCAAATACGTTGAGAAGGACAAGGCATT 469 >seq1768 Length=20761 Score = 122 bits (134), Expect = 2e-22 Identities = 279/405 (69%), Gaps = 20/405 (5%) Strand=Plus/Plus Query 298902 ACCAAAAAGAATGCTATTCTCACTGGTGAAGCTGGTGTAGGTAAAACACAAATCATCGAC 298961 ||||| || || | |||| | |||||| ||||||| ||||||||| ||| |||| Sbjct 7027 ACCAAGAACAACCCAGTTCTTATCGGTGAACCTGGTGTTGGTAAAACAGCTATCGTCGAA 7086 Query 298962 GGGCTTGCACAAGCTATTGCTGATGGTAACGTACCTGAACACCT-GAAAGACGTTGAAAT 299020 || ||||| || ||||| |||| | || ||||||| | | | | || || || Sbjct 7087 GGACTTGCTCATCGTATTGTGAATGGCGATGTCCCTGAACTCATTGCTCGGTGT-GAGAT 7145 Query 299021 TCTTTCACTAAATGTTGGTGCATTGACTGCTGGTACTAAGTATCGTGGTGAATTTGAAGA 299080 | || || || | ||||| |||| ||||||| | ||||| ||||||||||||||||| Sbjct 7146 CCACTCTCTTGATATGGGTGCGTTGATTGCTGGTGCCAAGTACCGTGGTGAATTTGAAGA 7205 Query 299081 ACGCATC--GACAATTTGCTAAAAGAACTA-AAGAAACGTGAA---AATACTATTGTTTT 299134 ||| || | || | | | |||||| || |||||| ||||| || | ||| | || Sbjct 7206 ACGACTCAAGGCAGTAT--TGAAAGAAGTACAAGAAA-GTGAAGGCAAAATTATCTTGTT 7262 Query 299135 CATTGATGAAATTCATATTATGGTTGGGGCTGGTTCCGCAAGTAATGGTTCTATGGACAT 299194 | | |||||||| || | || |||| |||||| | || | |||| | |||| || Sbjct 7263 CGTCGATGAAATGCACTTGATTCTTGGTGCTGGTGCTACAGG---TGGTGCGATGG--AT 7317 Query 299195 G-AGC-AATATGCTTAAGCCAGCACTT-TCACGTGGTGAGATTCGTGTAATTGGTGCAAC 299251 | ||| ||| |||| || ||| | ||| | ||||| || | || |||||||| || Sbjct 7318 GCAGCTAATTTGCTCAAACCA-CTCTTGGCTCGTGGCGAATTACGATGCATTGGTGCCAC 7376 Query 299252 AACATATGATGAATATCGTAAAAATATCGAGAAAGATAGTGCATT 299296 || | || ||||| || ||| | | ||||| || | ||||| Sbjct 7377 CACCTTGGAAGAATACCGCAAATACGTGGAGAAGGACAAGGCATT 7421 >seq279 Length=32837 Score = 93.3 bits (102), Expect = 9e-14 Identities = 256/386 (66%), Gaps = 16/386 (4%) Strand=Plus/Minus Query 298894 CTCGCAAAACCAAAAAGAATGCTATTCTCACTGGTGAAGCTGGTGTAGGTAAAACACAAA 298953 |||| | |||||| || ||| || | | | ||||||| ||||||| ||||| || | Sbjct 8973 CTCGAAGAACCAAGAATAATCCTGTCTTAATTGGTGAACCTGGTGTTGGTAAGACTGCGA 8914 Query 298954 TCATCGACGGGCTTGCACAAGCTATTGCTGATGGTAACGTACCTGAACACCTGAA----A 299009 | || || ||||||||| ||||| ||| | || |||||| | |||| | Sbjct 8913 TTGCTGAAGGACTTGCACAACGAATTGCATCGGGTGAAGTGCCTGAAAGCATGAAGAAAA 8854 Query 299010 GACGTTGAAATTCTTTCACTAAATGTTGGTGCATTGACTGCTGGTACTAAGTATCGTGGT 299069 |||| || | | | || | | ||| ||| |||||| | || | ||||||| Sbjct 8853 AACGTG----TTGTCGCGTTGGATTTAGCTGCGTTGGTTGCTGGAGCGAAATTTCGTGGT 8798 Query 299070 GAATTTGAAGAACGCATCGACAATT-TGCTAAAAGAACT--AAAGAAACG-TGAAAATAC 299125 |||||||||||||| || || | || | ||||| | |||| | | || | | Sbjct 8797 GAATTTGAAGAACG-ATTGAAAGGAGTGTTGAAAGATGTGGAAAGCAGCAATGGAGAAGT 8739 Query 299126 TATTGTTTTCATTGATGAAATTCATATTATGGTTGGGGCTGGTTCCGCAAGTAATGGTTC 299185 |||| | || ||||||||| | ||||| | | || |||||| | | | |||| || Sbjct 8738 TATTTTGTTTATTGATGAATTGCATATGCTTATGGGTGCTGGT---GGAGGCGATGGATC 8682 Query 299186 TATGGACATGAGCAATATGCTTAAGCCAGCACTTTCACGTGGTGAGATTCGTGTAATTGG 299245 ||||| |||||||||||| ||||||||| | ||||| | | | | || || Sbjct 8681 GATGGATGCTGCCAATATGCTTAAACCAGCACTTGCTCGTGGATCGTTGCATTGTATGGG 8622 Query 299246 TGCAACAACATATGATGAATATCGTA 299271 ||| || ||| ||||||||| |||| Sbjct 8621 TGCTACGACACTTGATGAATACCGTA 8596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1115095001397377