Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq419 132 5e-26 seq580 122 8e-23 seq2092 113 4e-20 seq5008 111 1e-19 seq2232 111 1e-19 >seq419 Length=23932 Score = 132 bits (146), Expect = 5e-26 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| || | |||||||| | | || || ||||| || ||||||||||||| || Sbjct 23279 ACGCAAACGGAGGACCAAATGCAATGTAGATTCCTTTTGGATATTGTAGTCGCTCAAAGT 23220 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||||||||||||||||| | | |||| ||||| |||||||||||||| ||||| Sbjct 23219 TCGTCCGTCTTCGAGCTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATGCC 23160 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| ||||| ||| |||||||||| | || | | || | || || || || | Sbjct 23159 TTCCTTATCTTGAATCTTTTGTTTCACGTTGTCGATGGAGTCCGATGGTTCGACGTCAAG 23100 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||| ||||| |||| ||| || | || || |||||| Sbjct 23099 TGTGATCGTCTTACCGGTCAAAGTCTTAACAAAGATTTGCATG 23057 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| || | ||||||||| | | || || ||||| || ||||| ||||||| ||| Sbjct 23051 ACGCAAACGAAGAACCAAATGCAATGTGGATTCCTTTTGGATATTGTAATCGCTCAGGGT 22992 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||||||||| || || || | | |||| ||||| |||||||||||||| ||||| Sbjct 22991 ACGACCATCTTCGAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATGCC 22932 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| ||||| ||| ||||| || | | || | | || | ||||| || |||| Sbjct 22931 TTCCTTATCTTGAATCTTTTGCTTGACGTTGTCAATGGAGTCCGATGGCTCAACATCGAG 22872 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACTTATTA 132132 ||| | || || || || || || || | || || |||||| || ||| Sbjct 22871 CGTGATTGTCTTCCCCGTGAGTGTCTTGACAAAGATTTGCATGGTTTCTTA 22821 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | || || ||||| |||||||||||||| | ||||| | Sbjct 23500 CGCAAGACCAAATGCAATGTAGATTCCTTTTGGATGTTGTAGTCGCTTAAAGTACGGCCA 23441 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||||||| |||||||||| | | || || || |||||||||||||| |||||||| || Sbjct 23440 TCTTCGAGTTGTTTACCGGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCTTG 23381 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || |||||||| | | || | | || | || || || || | || | | Sbjct 23380 TCTTGGATCTTTTGTTTAACATTATCAATGGAGTCCGAAGGTTCGACGTCAAGTGTGATC 23321 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || ||||| |||| || |||| ||||| |||||| Sbjct 23320 GTCTTACCGGTCAACGTCTTTACAAAAATTTGCATG 23285 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| || | ||||| || | | || || ||||| ||||||||||| || | ||| Sbjct 23735 ACGCAAACGAAGGACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCACTAAGGGT 23676 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| || |||||||| | | | || || || |||||||||||||| ||||| Sbjct 23675 GCGGCCATCTTCAAGTTGTTTACCAGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCC 23616 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || ||| ||||| || | | || | | ||| | || || || |||| Sbjct 23615 TTCCTTGTCTTGAATCTTTTGCTTGACGTTGTCAATGGAATCCGATGGTTCGACATCGAG 23556 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || ||||| |||| || || | ||| || ||||| Sbjct 23555 AGTAATGGTCTTACCCGTCAATGTCTTCACGAAGATTTGCAT 23514 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131933 TCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAG 131992 || ||||| |||||||||||||| | || || ||||||||| || || |||| | || Sbjct 23932 TCCTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCAAAG 23873 Query 131993 ATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGT 132052 || ||||| |||||||| || || |||||||| || || || ||||| || | | Sbjct 23872 ATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTG 23813 Query 132053 TCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATG 132112 || | || ||| | || || || |||| || | |||||||| |||| || || | Sbjct 23812 TCAATAGAATCCGAAGGTTCGACATCGAGGGTAATGGTTTTACCCGTCAATGTCTTGACA 23753 Query 132113 AAAATCTGCATG 132124 || || |||||| Sbjct 23752 AAGATTTGCATG 23741 >seq580 Length=37562 Score = 122 bits (134), Expect = 8e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| || ||||| || | ||||| | || || || |||||||||||||| || | | Sbjct 8044 ACGTAAACGCAAGACTAGATGTAGAGTAGATTCCTTCTGAATGTTGTAGTCACTGAGAGA 8103 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||||||||| ||||| || | | | |||| ||| |||||||||||||| ||||| Sbjct 8104 ACGACCATCTTCGAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGATCTGGAGGGATGCC 8163 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || ||| |||||||||| | || | | || | || ||||| || | Sbjct 8164 TTCTTTGTCTTGAATCTTTTGTTTCACATTATCAATTGAGTCTGAAGGTTCCACGTCAAG 8223 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || ||||||| || || | |||||| ||||| Sbjct 8224 TGTAATAGTCTTTCCAGTCAATGTCTTGACGAAAATTTGCAT 8265 Score = 102 bits (112), Expect = 8e-17 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 || || ||||| ||||| || | | | || || ||||| || |||||||| || | ||| Sbjct 8501 CGTAAACGCAACACCAAGTGCAAGGTCGATTCCTTTTGGATATTGTAGTCACTAAGAGTA 8560 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || |||||| | ||||| || | | |||| | ||| |||||||||||||| || ||| Sbjct 8561 CGTCCATCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCT 8620 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || ||||||||| || | | || | | || | || ||||| || | | Sbjct 8621 TCCTTGTCTTGAATTTTTTGCTTGACGTTATCAATCGAGTCCGAAGGTTCCACGTCCAAC 8680 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACTT 132128 || | || || || || || || || | || || |||||||||| Sbjct 8681 GTAATTGTCTTTCCGGTGAGTGTCTTGACAAAGATTTGCATGACTT 8726 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| ||||| || | | || || ||||||||||||||||| || | ||||| Sbjct 7823 CGCAATACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCACTTAATGTACGACCG 7882 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || |||||||| | | || | ||| |||||||| ||||| |||||||| || Sbjct 7883 TCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCCGGAGGGATGCCTTCCTTG 7942 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || ||||| || | | || | | |||| || || || || | || | Sbjct 7943 TCTTGGATCTTTTGCTTGACATTATCAATCGAGTCGGATGGTTCAACATCCAAGGTAATG 8002 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || |||| |||||| | || || ||||| Sbjct 8003 GTTTTTCCCGTCAAAGTTTTGACAAAGATTTGCAT 8037 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| || | |||||||| | | || || |||||||||||||| || || | || Sbjct 8272 ACGCAAACGTAGGACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCACTGAGAGT 8331 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||||||||| ||||| || | | | || | || || || ||||| || ||||| Sbjct 8332 GCGGCCATCTTCGAGTTGTTTGCCAGCAAAAATCAATCGTTGCTGGTCTGGTGGGATGCC 8391 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| ||||| || |||||||| | | || | | || | || || || || | Sbjct 8392 TTCCTTATCTTGGATCTTTTGTTTTACGTTATCAATCGAGTCCGAAGGTTCGACATCCAA 8451 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || |||| || |||| |||||| ||||| Sbjct 8452 TGTAATTGTCTTGCCGGTCAACGTCTTTACGAAAATTTGCAT 8493 >seq2092 Length=13256 Score = 113 bits (124), Expect = 4e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | ||||| || | | || || ||||| |||||||| ||||||| || Sbjct 11916 ACGAAGGCGAAGGACCAAGTGCAAAGTCGATTCCTTTTGGATGTTGTAATCGCTCAAAGT 11857 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||||||||| || || |||| | |||| | ||| |||||||||||||| ||||| Sbjct 11856 GCGACCATCTTCGAGTTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCC 11797 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || ||||||||| || | | || | | ||| | || || || || | Sbjct 11796 TTCCTTGTCTTGAATTTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGACATCCAA 11737 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || ||||| |||| || |||| ||| |||||||| Sbjct 11736 TGTGATGGTCTTACCCGTCAAGGTCTTTACGAAGATCTGCAT 11695 >seq5008 Length=14815 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | || |||||||| |||||||| ||||||| ||||| |||||| Sbjct 6430 ACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCGCTCAAAGTACGTCCATCTTCA 6371 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || ||||| || | | |||| | ||| |||||||||||||| |||||||| || || | Sbjct 6370 AGTTGTTTGCCTGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGA 6311 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || ||||| || | | || | | ||| | || || || || | ||| | || || Sbjct 6310 ATCTTTTGCTTGACATTATCAATCGAATCCGAAGGTTCGACATCCAACGTGATGGTCTTG 6251 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||| || || | ||| |||||||| Sbjct 6250 CCTGTCAATGTCTTGACGAAGATCTGCAT 6222 >seq2232 Length=15861 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || |||||||||||||| ||||||| ||||| ||||||||| || || |||| | Sbjct 589 GATTCCTTTTGAATGTTGTAATCGCTCAAAGTACGACCATCTTCGAGTTGCTTGCCGGCA 530 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | ||| |||||||||||||| || ||||| || || || ||||| || | Sbjct 529 AAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTTTGCTTGACG 470 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||| || || | ||| | || || ||||||| || || Sbjct 469 TTGTCAATCGAGTCCGAAGGCTCTACATCCAACGTGATGGTCTTGCCAGTCAATGTCTTG 410 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 409 ACGAAAATCTGCAT 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476579427905880