Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq580 116 3e-21 seq419 109 5e-19 seq5008 93.3 4e-14 seq2092 89.7 5e-13 seq2232 87.8 2e-12 >seq580 Length=37562 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || ||||| || || ||||| || | || || | || |||||| | Sbjct 8493 ATGCAAATTTTCGTAAAGACGTTGACCGGCAAGACAATTACATTGGATGTCGAACCTTCG 8434 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || | || || | ||||||||||| || ||||| || || || || || || ||| Sbjct 8433 GACTCGATTGATAACGTAAAACAAAAGATCCAAGATAAGGAAGGCATCCCACCAGACCAG 8374 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| || | |||| | ||||||||||||||||||| | | | |||| |||||||| Sbjct 8373 CAACGATTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACTCTCAGTGATTACAAC 8314 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||| |||||||| ||||||| || || | ||| | || || Sbjct 8313 ATTCAAAAGGAATCCACACTTCATTTGGTCCTACGTTTGCGTGGTGG 8267 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || ||||| || ||||| | || || | || || ||| | Sbjct 8265 ATGCAAATTTTCGTCAAGACATTGACTGGAAAGACTATTACACTTGACGTGGAACCTTCA 8206 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || | || || | || |||||||| ||| || ||||| || || || || ||||| Sbjct 8205 GACTCAATTGATAATGTGAAACAAAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 8146 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| | ||||||||||||||||||| | | | |||| || ||||| Sbjct 8145 CAACGTTTAATTTTTGCTGGCAAACAACTCGAAGATGGTCGTTCTCTCAGTGACTACAAC 8086 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 ||||| || ||||| || | ||| |||| || Sbjct 8085 ATTCAGAAGGAATCTACTCTACATCTAGTCTT 8054 >seq419 Length=23932 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | |||||||| || || ||||| || ||||||| | || |||||| | Sbjct 23285 CATGCAAATTTTTGTAAAGACGTTGACCGGTAAGACGATCACACTTGACGTCGAACCTTC 23344 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || | || || | || |||||||| || || || || || || || || ||||| Sbjct 23345 GGACTCCATTGATAATGTTAAACAAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCA 23404 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | ||||||| | ||| |||||||||||||||| | | | | ||||| ||||| Sbjct 23405 ACAACGCCTCATTTTTGCCGGTAAACAACTCGAAGATGGCCGTACTTTAAGCGACTACAA 23464 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 || ||||| ||||| || | ||||| || || Sbjct 23465 CATCCAAAAGGAATCTACATTGCATTTGGTCTT 23497 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| || ||| | || || || | |||||| |||| || || |||| Sbjct 22829 CATGCAAATCTTTGTCAAGACACTCACGGGGAAGACAATCACGCTCGATGTTGA-GCCAT 22887 Query 25234 CG-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 || | | || || | || || ||||| ||| ||||| || || || || || |||| Sbjct 22888 CGGACTCCATTGACAACGTCAAGCAAAAGATTCAAGATAAGGAAGGCATTCCTCCAGATC 22947 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 | ||| | || || | | ||||| ||||||||||||| | | | | |||||||||| Sbjct 22948 AACAACGTCTTATCTTTGCTGGCAAGCAACTCGAAGATGGTCGTACCCTGAGCGATTACA 23007 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||| ||||| |||||||| | ||||| || Sbjct 23008 ATATCCAAAAGGAATCCACATTGCATTTGGT 23038 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| || ||||| || || ||| | || || |||| |||||| | Sbjct 23741 CATGCAAATCTTTGTCAAGACATTGACGGGTAAAACCATTACCCTCGATGTCGAACCTTC 23800 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| |||| || | || || ||||| || || || || || || || || ||||| Sbjct 23801 GGATTCTATTGACAATGTCAAGCAAAAGATCCAAGACAAGGAAGGCATTCCACCTGATCA 23860 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | ||||| | | |||||| ||||||||||||| | | | ||||||| ||||| Sbjct 23861 ACAACGTCTCATCTTTGCCGGCAAGCAACTCGAAGATGGCCGCACTCTCAGCGACTACAA 23920 Query 25354 TATTCAAAAAGA 25365 || ||||| || Sbjct 23921 CATCCAAAAGGA 23932 >seq5008 Length=14815 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || ||||| || || || | |||||| | || |||||| | Sbjct 6222 ATGCAGATCTTCGTCAAGACATTGACAGGCAAGACCATCACGTTGGATGTCGAACCTTCG 6281 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||| | || || | || || ||||| ||| || || || || || || || ||||| Sbjct 6282 GATTCGATTGATAATGTCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 6341 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | || | | ||||||||||| ||||||| | | | | ||||||||||| Sbjct 6342 CAACGTTTGATCTTTGCAGGCAAACAACTTGAAGATGGACGTACTTTGAGCGATTACAAC 6401 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 || ||||||||||| || ||||||| || Sbjct 6402 ATCCAAAAAGAATCTACTCTTCATTTGGT 6430 >seq2092 Length=13256 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || ||||| || || || || || | ||||| | || |||||| | Sbjct 11695 ATGCAGATCTTCGTAAAGACCTTGACGGGTAAGACCATCACATTGGATGTCGAACCTTCG 11754 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||| | || || | || || ||||||||| || || || || || || || ||||| Sbjct 11755 GATTCGATTGATAATGTCAAGCAAAAAATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 11814 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | || | | |||||| ||||||||||||| | | | | | ||||||||||| Sbjct 11815 CAACGTTTGATCTTTGCCGGCAAGCAACTCGAAGATGGTCGCACTTTGAGCGATTACAAC 11874 Query 25355 ATTCAAAAAGAATCCAC 25371 || ||||| ||||| || Sbjct 11875 ATCCAAAAGGAATCGAC 11891 >seq2232 Length=15861 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 25168 AAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA 25227 || ||| ||||| | || || || ||||| || || || | |||||| | || || || Sbjct 389 AAGCAATATGCAGATTTTCGTCAAGACATTGACTGGCAAGACCATCACGTTGGATGTAGA 448 Query 25228 AGCCAACG-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGC 25286 ||| || | | || || | || || ||||| || || || || ||||| || | Sbjct 449 -GCCTTCGGACTCGATTGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGTATTCCTC 507 Query 25287 CCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCG 25346 | ||||| ||| | | || | | |||||| ||||||||||||| | | | | | |||| Sbjct 508 CAGATCAACAACGTTTGATCTTTGCCGGCAAGCAACTCGAAGATGGTCGTACTTTGAGCG 567 Query 25347 ATTACAATATTCAAAAAGAATCCAC 25371 ||||||| |||||||| ||||| || Sbjct 568 ATTACAACATTCAAAAGGAATCGAC 592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445064728894560