Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq580 131 1e-25 seq5008 120 2e-22 seq419 105 5e-18 seq2232 104 2e-17 seq2092 98.7 8e-16 >seq580 Length=37562 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || || ||||||||||| ||||| ||||| | || ||||| Sbjct 8265 ATGCAAATTTTCGTCAAGACATTGACTGGAAAGACTATTACACTTGACGTGGAACCTTCA 8206 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || ||| | ||||||||||| ||| |||||||||||| | || |||||| Sbjct 8205 GACTCAATTGATAATGTGAAACAAAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAA 8146 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | |||| ||| ||||||||| | |||||| | || | | || |||||| Sbjct 8145 CAACGTTTAATTTTTGCTGGCAAACAACTCGAAGATGGTCGTTCTCTCAGTGACTACAAC 8086 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || || |||||||| |||||| |||| ||| | ||||| || || Sbjct 8085 ATTCAGAAGGAATCTACTCTACATCTAGTCTTGCGTTTACGTGGTGG 8039 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || || || ||||| |||||||| ||||| |||| ||||| Sbjct 8493 ATGCAAATTTTCGTAAAGACGTTGACCGGCAAGACAATTACATTGGATGTCGAACCTTCG 8434 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || ||| | || |||||||| || || || |||||| | || || || Sbjct 8433 GACTCGATTGATAACGTAAAACAAAAGATCCAAGATAAGGAAGGCATCCCACCAGACCAG 8374 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | |||| ||| ||||||||| | |||||| ||| | | ||||||||| Sbjct 8373 CAACGATTGATTTTTGCTGGCAAACAACTCGAAGATGGCCGCACTCTCAGTGATTACAAC 8314 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || ||||| ||||| ||||| ||||| || Sbjct 8313 ATTCAAAAGGAATCCACACTTCATTTGGT 8285 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| || ||| | || || ||||| ||||| |||| ||||| Sbjct 8721 ATGCAAATCTTTGTCAAGACACTCACCGGAAAGACAATTACGTTGGACGTGGAACCTTCG 8662 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || ||| | || || ||||||||| ||||| ||||| | || |||||| Sbjct 8661 GACTCGATTGATAACGTCAAGCAAAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 8602 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | ||| ||||||||||| |||||| ||| | | || ||||| Sbjct 8601 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGATGGACGTACTCTTAGTGACTACAAT 8542 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||| ||||| || | || || || ||| | |||||||| || Sbjct 8541 ATCCAAAAGGAATCGACCTTGCACTTGGTGTTGCGTTTACGAGGCGG 8495 >seq5008 Length=14815 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || || || || |||||||| ||||||||||| || |||| ||||| Sbjct 6222 ATGCAGATCTTCGTCAAGACATTGACAGGCAAGACCATCACGTTGGATGTCGAACCTTCG 6281 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||||| ||| | || || ||||| ||| ||||| |||||| | || |||||| Sbjct 6282 GATTCGATTGATAATGTCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 6341 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | ||| ||||||||| | |||||| ||| || ||||||||||| Sbjct 6342 CAACGTTTGATCTTTGCAGGCAAACAACTTGAAGATGGACGTACTTTGAGCGATTACAAC 6401 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || |||||||||||||| || ||||| || Sbjct 6402 ATCCAAAAAGAATCTACTCTTCATTTGGT 6430 >seq419 Length=23932 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| || || ||||| || ||||| || || | || ||||| Sbjct 23286 ATGCAAATTTTTGTAAAGACGTTGACCGGTAAGACGATCACACTTGACGTCGAACCTTCG 23345 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || ||| | || |||||||| || ||||| |||||| | || |||||| Sbjct 23346 GACTCCATTGATAATGTTAAACAAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAA 23405 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | || |||| ||| || |||||| | |||||| ||| | |||| |||||| Sbjct 23406 CAACGCCTCATTTTTGCCGGTAAACAACTCGAAGATGGCCGTACTTTAAGCGACTACAAC 23465 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTG 106472 || ||||| ||||||||| | ||||| || ||| Sbjct 23466 ATCCAAAAGGAATCTACATTGCATTTGGTCTTG 23498 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| |||||||| || ||||| || ||||| || || | || ||||| Sbjct 23058 ATGCAAATCTTTGTTAAGACTTTGACCGGTAAGACGATCACACTTGACGTCGAACCATCG 23117 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || | | | | ||||||||||| ||| || || |||||| | || |||||| Sbjct 23118 GACTCCATCGACAACGTGAAACAAAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCAA 23177 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | ||||| | ||| || ||||| | ||||| |||| || |||| ||||| Sbjct 23178 CAACGTCTTATCTTTGCTGGTAAACAGCTCGAAGACGGACGAACTTTGAGCGACTACAAT 23237 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || ||||| ||||||||| | ||||| || Sbjct 23238 ATCCAAAAGGAATCTACATTGCATTTGGT 23266 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| || || || |||||||| || ||||||||||| | || ||||| Sbjct 23514 ATGCAAATCTTCGTGAAGACATTGACGGGTAAGACCATTACTCTCGATGTCGAACCATCG 23573 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||||| ||| | | || || ||||| ||| ||||| |||||| | || |||||| Sbjct 23574 GATTCCATTGACAACGTCAAGCAAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 23633 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | || |||| ||| || |||||| | |||||| || | | || |||||| Sbjct 23634 CAACGCCTCATTTTTGCTGGTAAACAACTTGAAGATGGCCGCACCCTTAGTGACTACAAC 23693 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || ||||| ||||| || || || || || Sbjct 23694 ATCCAAAAGGAATCGACTCTTCACTTGGT 23722 >seq2232 Length=15861 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 || ||||| ||||| || || |||||||||||||||||||| || |||| ||| || Sbjct 393 AATATGCAGATTTTCGTCAAGACATTGACTGGCAAGACCATCACGTTGGATGTAGAGCCT 452 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 || || ||| | | || || ||||| || ||||| ||||| | || ||| Sbjct 453 TCGGACTCGATTGACAACGTCAAGCAAAAGATCCAGGACAAGGAAGGTATTCCTCCAGAT 512 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 |||||| | | || | ||| ||||| ||| | |||||| | ||| || |||||||| Sbjct 513 CAACAACGTTTGATCTTTGCCGGCAAGCAACTCGAAGATGGTCGTACTTTGAGCGATTAC 572 Query 106437 AACATACAAAAAGAATCTAC 106456 ||||| ||||| ||||| || Sbjct 573 AACATTCAAAAGGAATCGAC 592 >seq2092 Length=13256 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || || || || || ||||| || |||||||| || |||| ||||| Sbjct 11695 ATGCAGATCTTCGTAAAGACCTTGACGGGTAAGACCATCACATTGGATGTCGAACCTTCG 11754 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||||| ||| | || || ||||||||| ||||| |||||| | || |||||| Sbjct 11755 GATTCGATTGATAATGTCAAGCAAAAAATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 11814 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | ||| ||||| ||| | |||||| | ||| || ||||||||||| Sbjct 11815 CAACGTTTGATCTTTGCCGGCAAGCAACTCGAAGATGGTCGCACTTTGAGCGATTACAAC 11874 Query 106440 ATACAAAAAGAATCTAC 106456 || ||||| ||||| || Sbjct 11875 ATCCAAAAGGAATCGAC 11891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402303450210464