Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq580 167 2e-36 seq419 147 2e-30 seq2092 131 2e-25 seq2232 122 9e-23 seq5008 114 1e-20 >seq580 Length=37562 Score = 167 bits (184), Expect = 2e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 ||||| || || ||||| || |||||||| |||||||||||||| | | | || Sbjct 8051 CGCAAGACTAGATGTAGAGTAGATTCCTTCTGAATGTTGTAGTCACTGAGAGAACGACCA 8110 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || ||||| |||||||| |||||||| ||||| || ||||| || || ||||||||||| Sbjct 8111 TCTTCGAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGATCTGGAGGGATGCCTTCTTTG 8170 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 |||||||| |||||||| || || | || ||| || | ||||||||| || ||||| Sbjct 8171 TCTTGAATCTTTTGTTTCACATTATCAATTGAGTCTGAAGGTTCCACGTCAAGTGTAATA 8230 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || |||||||||||||| Sbjct 8231 GTCTTTCCAGTCAATGTCTTGACGAAAATTTGCAT 8265 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || ||||| || | ||| || || ||||||||||||||||||||||| | Sbjct 7811 CCTCCACGAAGACGCAATACCAAGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCACTT 7870 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || ||| || || ||||| || || ||||||||||| || ||||| || || Sbjct 7871 AATGTACGACCGTCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTGATCCGGAGGG 7930 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || ||||| || ||||| ||||| || | | |||||| | ||| || Sbjct 7931 ATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTATCAATCGAGTCGGATGGTTCAACA 7990 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||||||||| || || |||||||| || || |||||||| Sbjct 7991 TCCAAGGTAATGGTTTTTCCCGTCAAAGTTTTGACAAAGATTTGCAT 8037 Score = 141 bits (156), Expect = 9e-29 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || ||||||||||||||||||||||| || | | ||| | || ||||| ||| Sbjct 8291 TGAAGTGTGGATTCCTTTTGAATGTTGTAATCACTGAGAGTGCGGCCATCTTCGAGTTGT 8350 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 ||||| ||||||||||| || ||||| || || || |||||||| || ||||| || ||| Sbjct 8351 TTGCCAGCAAAAATCAATCGTTGCTGGTCTGGTGGGATGCCTTCCTTATCTTGGATCTTT 8410 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||||| || || | | ||| || | ||| || || | ||||| || || ||||| Sbjct 8411 TGTTTTACGTTATCAATCGAGTCCGAAGGTTCGACATCCAATGTAATTGTCTTGCCGGTC 8470 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 || || || |||||||||||||| Sbjct 8471 AACGTCTTTACGAAAATTTGCAT 8493 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 |||||||| | ||| | || ||||||||||| || |||||||| | || || | Sbjct 8507 CGCAACACCAAGTGCAAGGTCGATTCCTTTTGGATATTGTAGTCACTAAGAGTACGTCCA 8566 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || | |||||||| ||||| |||||||| || ||||| || || || ||||| || Sbjct 8567 TCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTG 8626 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 |||||||||||||| ||||| || | | ||| || | ||||||||| | ||||| Sbjct 8627 TCTTGAATTTTTTGCTTGACGTTATCAATCGAGTCCGAAGGTTCCACGTCCAACGTAATT 8686 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| | || || || || |||||||| Sbjct 8687 GTCTTTCCGGTGAGTGTCTTGACAAAGATTTGCAT 8721 >seq419 Length=23932 Score = 147 bits (162), Expect = 2e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || ||||||||||| ||||||||||| | || |||| | || || || || Sbjct 23717 GTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCACTAAGGGTGCGGCCATCTTCAAGTTG 23658 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || |||||||| | || || ||||| || || |||||||| || |||||||| || Sbjct 23657 TTTACCAGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTT 23598 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| ||||| ||| | | || || | ||| || |||||||||||||| ||||| || Sbjct 23597 TTGCTTGACGTTGTCAATGGAATCCGATGGTTCGACATCGAGAGTAATGGTCTTACCCGT 23538 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| |||||||| Sbjct 23537 CAATGTCTTCACGAAGATTTGCAT 23514 Score = 143 bits (158), Expect = 3e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 || ||||||||||| || |||||||||| | || | ||| ||||||||||| || Sbjct 23254 GTAGATTCCTTTTGGATATTGTAGTCGCTCAAAGTTCGTCCGTCTTCGAGCTGTTTACCA 23195 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 ||||| || | ||| || ||||| || || |||||||| || |||||||| |||||||| Sbjct 23194 GCAAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCCTTATCTTGAATCTTTTGTTTC 23135 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || ||| | | ||| || | ||| ||||| || || || || |||||||| ||||| Sbjct 23134 ACGTTGTCGATGGAGTCCGATGGTTCGACGTCAAGTGTGATCGTCTTACCGGTCAAAGTC 23075 Query 134697 TTAACGAAAATTTGCAT 134713 ||||| || |||||||| Sbjct 23074 TTAACAAAGATTTGCAT 23058 Score = 129 bits (142), Expect = 6e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 134523 TCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAA 134582 |||||||| ||||||||||||| | ||| | || ||||| || ||||| ||||| Sbjct 23932 TCCTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCAAAG 23873 Query 134583 ATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCG 134642 || | ||| || ||||| || || |||||||| || ||||| || ||||| ||||| | Sbjct 23872 ATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTG 23813 Query 134643 TCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACG 134702 || | | || || | ||| || ||||| |||||||||||||| || || || || || Sbjct 23812 TCAATAGAATCCGAAGGTTCGACATCGAGGGTAATGGTTTTACCCGTCAATGTCTTGACA 23753 Query 134703 AAAATTTGCAT 134713 || |||||||| Sbjct 23752 AAGATTTGCAT 23742 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| || | || | || ||||||||||| ||||||||||||| | || | Sbjct 23503 AGACGCAAGACCAAATGCAATGTAGATTCCTTTTGGATGTTGTAGTCGCTTAAAGTACGG 23444 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || ||||| ||||| || |||||||| | || || ||||| || || |||||||| Sbjct 23443 CCATCTTCGAGTTGTTTACCGGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCC 23384 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || |||||||| || || | | ||| || | ||| ||||| || || Sbjct 23383 TTGTCTTGGATCTTTTGTTTAACATTATCAATGGAGTCCGAAGGTTCGACGTCAAGTGTG 23324 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| || || || || ||||||||||| Sbjct 23323 ATCGTCTTACCGGTCAACGTCTTTACAAAAATTTGCAT 23286 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 |||||||||||||| || ||||| |||| | ||| || || ||||| || ||||| Sbjct 23026 GTGGATTCCTTTTGGATATTGTAATCGCTCAGGGTACGACCATCTTCGAGTTGCTTGCCA 22967 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 ||||| || | ||| || ||||| || || |||||||| || |||||||| ||||| ||| Sbjct 22966 GCAAAGATAAGACGTTGTTGATCTGGAGGAATGCCTTCCTTATCTTGAATCTTTTGCTTG 22907 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || ||| | | ||| || | || || ||||| || || || || || || | || Sbjct 22906 ACGTTGTCAATGGAGTCCGATGGCTCAACATCGAGCGTGATTGTCTTCCCCGTGAGTGTC 22847 Query 134697 TTAACGAAAATTTGCAT 134713 || || || |||||||| Sbjct 22846 TTGACAAAGATTTGCAT 22830 >seq2092 Length=13256 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 || ||||||||||| |||||||| |||| | ||| || || ||||| || ||||| Sbjct 11891 GTCGATTCCTTTTGGATGTTGTAATCGCTCAAAGTGCGACCATCTTCGAGTTGCTTGCCG 11832 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 ||||| |||||||| || ||||| || || |||||||| || |||||||||||||| ||| Sbjct 11831 GCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATTTTTTGCTTG 11772 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || || | | || || | ||| || || | || ||||| ||||| || || || Sbjct 11771 ACATTATCAATCGAATCCGAAGGTTCGACATCCAATGTGATGGTCTTACCCGTCAAGGTC 11712 Query 134697 TTAACGAAAATTTGCAT 134713 || ||||| || ||||| Sbjct 11711 TTTACGAAGATCTGCAT 11695 >seq2232 Length=15861 Score = 122 bits (134), Expect = 9e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 || |||||||||||||||||||| |||| | || || || ||||| || ||||| Sbjct 592 GTCGATTCCTTTTGAATGTTGTAATCGCTCAAAGTACGACCATCTTCGAGTTGCTTGCCG 533 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 ||||| |||||||| || ||||| || || || ||||| || || || || ||||| ||| Sbjct 532 GCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTTTGCTTG 473 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || ||| | | ||| || | || || || | || ||||| || || || || || Sbjct 472 ACGTTGTCAATCGAGTCCGAAGGCTCTACATCCAACGTGATGGTCTTGCCAGTCAATGTC 413 Query 134697 TTAACGAAAATTTGCATTTTGTTTT 134721 || |||||||| ||||| ||| ||| Sbjct 412 TTGACGAAAATCTGCATATTGCTTT 388 >seq5008 Length=14815 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || ||||| ||||| |||||||| |||| | || | || || || ||| Sbjct 6424 TGAAGAGTAGATTCTTTTTGGATGTTGTAATCGCTCAAAGTACGTCCATCTTCAAGTTGT 6365 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 ||||||||||| |||||||| || ||||| || || |||||||| || |||||||| ||| Sbjct 6364 TTGCCTGCAAAGATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTT 6305 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || ||||| || | | || || | ||| || || | || ||||| || || || Sbjct 6304 TGCTTGACATTATCAATCGAATCCGAAGGTTCGACATCCAACGTGATGGTCTTGCCTGTC 6245 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| Sbjct 6244 AATGTCTTGACGAAGATCTGCAT 6222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505364708879160