Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq224 351 1e-91 seq2584 306 5e-78 >seq224 Length=84125 Score = 351 bits (388), Expect = 1e-91 Identities = 1195/1839 (65%), Gaps = 45/1839 (2%) Strand=Plus/Minus Query 68403 TGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACT 68462 || |||||| |||||||| || || || || || | |||| |||| |||||||| Sbjct 28859 TGAACGTAGGTAGTACATGCCTGTCTTAAGTCCACGTTTCCAAGCGTAAAAATGCATCGA 28800 Query 68463 TGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGAT 68522 || |||||| |||||||||||| ||||| | |||||||||||| |||| ||| Sbjct 28799 GGTGAGTTTGCTCACACTTGGATCGGCAATATGGACATTCATCGATTGCGATTGACAGAT 28740 Query 68523 GAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGT 68582 || || || | ||| || || | | || |||| ||||||| || |||||| | || Sbjct 28739 AAATGCACCACGATCAGCAGCAAGATCTAAAATAATCTTTTGCTTAACTTCCCATACTGT 28680 Query 68583 CTTAAAAATCTGTTTGATATCATCTGGAAGGCTCG-TA--TTTTGAATGGATCCACCATC 68639 ||| |||| | ||||||| | ||||| || || ||||||| |||| ||| Sbjct 28679 CTTGTAAATGTCTTTGATACGTTTTGGAATACTTAATACGTTTTGAACACTACCACGATC 28620 Query 68640 GGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAA---CTCT 68696 || |||| ||| | ||| ||||||| | | | | || || || | Sbjct 28619 ATGTAAAATTTGATTACGTACTTCAGCATTCCAAAGA---CCCAAAGATATAAGTTCTTT 28563 Query 68697 AAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATT 68756 | | || || || ||| |||||| |||| | || | ||||| ||| || || Sbjct 28562 CATCAAATATTTGTTGACAATTGTAAATTCACCAGCAAGAACACGACGAGAGTACATGTT 28503 Query 68757 ACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGG 68816 ||| ||||||| | |||||||| || || |||||||| ||||| || || ||||| Sbjct 28502 GGATGTAAATGGTTCAATTGATTCATTGTTGCCAAGAATTTGTGCAGTAGAAGCTGTTGG 28443 Query 68817 CATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATG 68876 ||| || || | ||| | | ||| | || |||||| | | || | |||| || || Sbjct 28442 CATTGGGGCAAGCAAAAGAGAATTGCGAATACCATGCTTGGCCACTTGAGCTTTGAG-TG 28384 Query 68877 TTTCCAA-TCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGT 68935 | || | |||||||||| | ||| |||| ||| | ||| ||||| | || || | Sbjct 28383 TAGCCCAGTCCCAAAGATTTGTTGGAGAAACACCCCACATATCATATTGGAAGATACCTT 28324 Query 68936 TACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAAC 68995 | ||| || || || ||| ||||| || || || | || || | ||| Sbjct 28323 TGCTTACAGGAGAGCCTGCATACGTTTCGTATGGACCAAATTCTTTGGCAATTTCCATGG 28264 Query 68996 TTGCCTCTA---ATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGT 69051 || || | ||||| |||| || ||||| || || | ||||||| | |||| Sbjct 28263 ATGTTTCCATGGATGCATGGTAA---ATAGTTTCAAAGATTTGAATATTGAGTTTCTTG- 28208 Query 69052 GCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACC 69111 ||||| | || || |||||| | |||||||| ||||| || | || ||||| Sbjct 28207 GCTTCAGCAGATTCAAAAGGATAACCCATGAGAATAAAGGCATCAGCAAGCCCTTGAACA 28148 Query 69112 CCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAA 69171 |||||||| ||||| | ||| | | |||| | || ||||||| |||||| || || Sbjct 28147 CCAATACCAATAGGACGATGACGCATATTGCTTCGTTTAGCTTCTTCAATAGGGTAGTAG 28088 Query 69172 TTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTG 69231 || || || || | ||| || | ||| || || | ||| | | | | ||| Sbjct 28087 TTGATTTCAATCACTTTGTTTAAATTGCGAGTAACAATTTTGGTGATTTTATGCAAATTG 28028 Query 69232 AGAAAATCAAATCGTCCATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAA 69291 ||| |||||| ||||| | ||||| | || || | ||||| | ||| || Sbjct 28027 GTAAAGTCAAATACACCATCATTGACAAATTTTGAAAGAGCAATCGATGCCAAATTGCAC 27968 Query 69292 ACTGCTACCTCATTAGAATTTGCATATTGTATTA--TCTCTGTACATAGATTACTACATT 69349 || || || |||| ||| ||||| || | || | | ||| || ||||| ||| Sbjct 27967 ACAGCCACTTCATCTTTGCTTGTATATTCGATAACTTCACAGCACA-AG-TTACTCGATT 27910 Query 69350 TGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG---TTACAGGCGTCCTTGTAAAGAA 69406 | ||||| || | ||||| || || | |||| || || || || ||||| | | Sbjct 27909 TAATAGTACCTAAGTTTTGTTGGTT---CGATTTGGAATTGCAAGCATCTTTGTACAACA 27853 Query 69407 TAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCAT 69466 || | || ||||||||||| || ||||| |||| ||| | ||| | | ||| | Sbjct 27852 TATATGGTGTACCAGTTTCGATTTGAGAATCGAGAATGGCAAACCATAATTGCTGAGCCT 27793 Query 69467 TTATTACGGTCTTGTAA---CGCTTCTCTTTTTCATATT--GTGTATATAGCCGTTCGAA 69521 | ||| ||||| | || || |||| ||| ||||| | ||| ||| || Sbjct 27792 TGATT---GTCTTTCGAGCACGACCTTCAGATTCAAATTTGGTGTACAAAGC--TTCAAA 27738 Query 69522 TTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACAC 69581 ||| | ||||| ||| | ||| |||| | ||||||||| || | || ||| || Sbjct 27737 TTCCTTGCCCCAGCAATCTTGCAAGCCAGAAGCTTCATTTGGGCAAA--AAAGACTCCA- 27681 Query 69582 ATCATCATC--CTTA-ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAG 69638 |||| ||| ||| || || |||||||| | ||| || ||||| | || |||||| Sbjct 27680 ATCACCATTTGCTTCGACACGCTTCATAAACAAATCAGGGATCCACAAGGCATAAAAGAG 27621 Query 69639 ATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAAT 69698 ||| | | | | | |||||| || |||||| || ||||| | |||||| | ||| Sbjct 27620 ATCACGAGCACGGTGTAGTTCATTGCCATGATTTTTCTTGAGATCCAAAAACTCAAAAAT 27561 Query 69699 ATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTG 69758 ||||| |||||||||||| ||||| || || | ||| || ||| || || || Sbjct 27560 ATCAGCATGCCATGGTTCAAGATACATGGCAAACGAACCCTTACGCTTACCACCACCTTG 27501 Query 69759 ATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTT 69818 || | || | || || | ||| | |||| ||||| ||||| ||||| || ||| Sbjct 27500 GTCAACATAGCGAGCGGTATCATTGAATACTCGAAGCATGGGAATGATACCGTTCGATGA 27441 Query 69819 ACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTAT 69878 ||||| || ||| ||||||||| | ||| ||||||||| ||| | || || Sbjct 27440 GCCATTGGTACCACGAATATAACTATTTGTTGAGCGAATATTGTGGATATTCACGCCGAT 27381 Query 69879 TCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTAT 69938 || || ||| ||| || || |||||| ||||||| || ||||| ||||| || || Sbjct 27380 ACCACCAGCCCATTTGGAAATACAAGCACATTGTTTCAAAGTATCATAAATACCTTCAAT 27321 Query 69939 GCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGC 69998 ||| || ||||| | |||||| || |||| ||| || || ||| || || Sbjct 27320 CGAATCGTCCTTCATGGCCAAAAGAAAGCAAGACGACAATTGTGGACGTGGAGTACCAGC 27261 Query 69999 ATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTC 70058 ||| || | ||||| | || || ||||| | ||| | | | || || || Sbjct 27260 ATTGAAAAGAGTAGGTGTAGCATGGGTGAAGAACATTTGACTCATGTATTCATAAGTGTC 27201 Query 70059 AATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTG 70118 | |||| | ||||| | |||||| || | || |||||||| | ||| ||||| Sbjct 27200 CAAAGCTCCAGCAATATCTTCTTTATGAATACCAACAGCAACACGCATGATCATGTGCTG 27141 Query 70119 AGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAA 70178 ||||||||| ||| ||||| || | || || ||||||| ||||||||| Sbjct 27140 AGGTCGTTCACAAACTTTTCCATTTACTTGAAGCAAATAGCTCTTTTCCAAAGTTTTAAA 27081 Query 70179 CCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || | ||| ||| || | || ||||||| Sbjct 27080 TCCAAAGTAATCATATTCAAAATCACGATCAGAAATAAT 27042 >seq2584 Length=5567 Score = 306 bits (338), Expect = 5e-78 Identities = 439/612 (72%), Gaps = 15/612 (2%) Strand=Plus/Plus Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 |||| | |||||| ||||||||||| || |||||||| | | ||| | |||||| |||| Sbjct 3227 ACATGAGGCAGGCAAAGTCACAATGAAGACCCTCATCACGAGAAATAAGTTCGTTCGAAA 3286 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA-GATCCA 39727 | | | |||||||| | |||||| || ||||||||||| || | ||||||| ||||| Sbjct 3287 AGCTTAAACCAGGCATCAAACCACGTTTCTTGAGCCAAAAGATCG-AGCAAAATGATCCT 3345 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA------ACTT 39781 |||||||| || ||||| || || ||||| || |||| | ||| | || | || Sbjct 3346 GAAAAGAAAATACCTTCAACAGCAGCAAAGGCTACAATACGTTCTGCATACGCAGCAATT 3405 Query 39782 GTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTT 39841 | |||| | | ||| || | ||||| | |||||| | ||||||||| || || Sbjct 3406 TTGCCATT--GCA-CCATTTAAGAGCCCATTTAGCTTTACGTTGTACACAAGGAATCGTA 3462 Query 39842 TCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAAC 39901 || ||||| | || | | || |||||| || | || || | ||| ||||| || | | Sbjct 3463 TCAATAGCCCTCAAAACACGATCTTTTTCCACAATGTCCTTGATATAAGTATCAATGAGC 3522 Query 39902 AGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTT 39961 | ||| | ||||||||| || ||||| || || || |||||||| ||||||||||| Sbjct 3523 AACGAATAAACTTCTGAATGAATATTTTCGATAGCAATTTGAAATCCATAAAAACATCTA 3582 Query 39962 GCTTCAGTAATTTGTACCTC--TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTC 40019 ||||||| | |||||| || || | ||| || | |||||||||||||| || || | Sbjct 3583 GCTTCAGGTACTTGTACTTCATTGGAAAAATTCATG--GCCAAATTTTCATTTACAATAC 3640 Query 40020 CATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA 40079 |||| || |||||||||||||||||||| ||||||| || ||||| | || | Sbjct 3641 CATCCGATGCTGCAAAAAATGCCAATACATGGGTAATAAAGAATCGTTCATTGTCCGTAA 3700 Query 40080 ATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACG 40139 ||| |||| || || ||||| | | ||||| |||||| || |||||||| | Sbjct 3701 GTTTTGTCCAATCTTTCATATCATGGACAAGATCTAATTCTTCTGCAGTCCAAAAACTAG 3760 Query 40140 CCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATC 40199 | || || || || ||||| | ||| | ||| | ||| || ||||||| ||||||| Sbjct 3761 CTTCAGCTTTCTTATACATTTCCCACACATCTGTGTGTTGAATAGGAAAAAGCACAAATC 3820 Query 40200 TATTTGGATTTT 40211 |||||| |||| Sbjct 3821 GATTTGGGTTTT 3832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686863008942120