Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq1264 140 7e-28 seq1768 122 2e-22 seq279 93.3 9e-14 >seq1264 Length=6109 Score = 140 bits (154), Expect = 7e-28 Identities = 283/405 (70%), Gaps = 20/405 (5%) Strand=Plus/Plus Query 332037 AATGCACTATCTTTCTCGATATTTTTACGATATTCATCATATGTTGTTGCACCAATTACA 332096 ||||| | || ||||| | | ||| || ||||| || | || || |||||||| Sbjct 469 AATGCCTTGTCCTTCTCAACGTATTTGCGGTATTCTTCCAAGGTGGTGGCACCAATGCAT 528 Query 332097 CGAATCTCACCACGTGA-AAGTGCTGGCTTAAGCATATT-GCT-CATGTCCATAGAACCA 332153 || | |||||||| | ||| | ||| || |||| ||| ||| ||| |||| | |||| Sbjct 529 CGTAATTCACCACGAGCCAAGAG-TGGTTTGAGCAAATTAGCTGCAT--CCATCGCACCA 585 Query 332154 TTACTTGCGGAACCAGCCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTATT- 332212 | || | |||||| |||| || | || |||||||| ||||| | ||| | || Sbjct 586 ---CCTGTAGCACCAGCACCAAGAATCAAGTGCATTTCATCGATGAACAAGATAATTTTG 642 Query 332213 --TTCACGTTTCTT-TAGTTCTTTTAGCAAATTGTC--GATGCGTTCTTCAAATTCACCA 332267 ||||| |||||| || |||||| | | | || | || | |||||||||||||||| Sbjct 643 CCTTCAC-TTTCTTGTACTTCTTTCA--ATACTGCCTTGAGTCTTTCTTCAAATTCACCA 699 Query 332268 CGATACTTAGTACCAGCAGTCAATGCACCAACATTTAGTGAAAGAATTTCAACGTCTTTC 332327 || ||||| | ||||||| |||| ||||| | || || || | ||||| || || | Sbjct 700 CGGTACTTGGCACCAGCAATCAACGCACCCATATCAAGAGAGTGGATTTC-ACATCGAGC 758 Query 332328 -AGGTGTTCAGGTACGTTACCATCAGCAATAGCTTGTGCAAGCCCGTCGATGATTTGTGT 332386 | | ||||||| || | ||||| ||||| || ||||| || |||| ||| ||| Sbjct 759 AATGAGTTCAGGGACATCACCATTCACAATACGATGAGCAAGTCCTTCGACGATAGCTGT 818 Query 332387 TTTACCTACACCAGCTTCACCAGTGAGAATAGCATTCTTTTTGGT 332431 |||||| ||||||| |||||| | |||| | || || ||||| Sbjct 819 TTTACCAACACCAGGTTCACCGATAAGAACTGGGTTGTTCTTGGT 863 >seq1768 Length=20761 Score = 122 bits (134), Expect = 2e-22 Identities = 279/405 (69%), Gaps = 20/405 (5%) Strand=Plus/Minus Query 332037 AATGCACTATCTTTCTCGATATTTTTACGATATTCATCATATGTTGTTGCACCAATTACA 332096 ||||| | || ||||| | | ||| || ||||| || | || || |||||||| Sbjct 7421 AATGCCTTGTCCTTCTCCACGTATTTGCGGTATTCTTCCAAGGTGGTGGCACCAATGCAT 7362 Query 332097 CGAATCTCACCACGTGA-AAGTGCTGGCTTAAGCATATT-GCT-CATGTCCATAGAACCA 332153 || | || ||||| | ||| | ||| || |||| ||| ||| ||| |||| | |||| Sbjct 7361 CGTAATTCGCCACGAGCCAAGAG-TGGTTTGAGCAAATTAGCTGCAT--CCATCGCACCA 7305 Query 332154 TTACTTGCGGAACCAGCCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTATT- 332212 | || | |||||| |||| || | || |||||||| | ||| | ||| | || Sbjct 7304 ---CCTGTAGCACCAGCACCAAGAATCAAGTGCATTTCATCGACGAACAAGATAATTTTG 7248 Query 332213 --TTCACGTTTCTT-TAGTTCTTTTAGCAAATTGTC--GATGCGTTCTTCAAATTCACCA 332267 ||||| |||||| || |||||| | | | || | || |||||||||||||||||| Sbjct 7247 CCTTCAC-TTTCTTGTACTTCTTTCA--ATACTGCCTTGAGTCGTTCTTCAAATTCACCA 7191 Query 332268 CGATACTTAGTACCAGCAGTCAATGCACCAACATTTAGTGAAAGAATTTCAACGTCTTTC 332327 || ||||| | ||||||| |||| ||||| | || || || | || || || | | Sbjct 7190 CGGTACTTGGCACCAGCAATCAACGCACCCATATCAAGAGAGTGGATCTC-ACACCGAGC 7132 Query 332328 -AGGTGTTCAGGTACGTTACCATCAGCAATAGCTTGTGCAAGCCCGTCGATGATTTGTGT 332386 | | ||||||| || | |||| ||||| || ||||| || |||| ||| ||| Sbjct 7131 AATGAGTTCAGGGACATCGCCATTCACAATACGATGAGCAAGTCCTTCGACGATAGCTGT 7072 Query 332387 TTTACCTACACCAGCTTCACCAGTGAGAATAGCATTCTTTTTGGT 332431 |||||| ||||||| |||||| | |||| | || || ||||| Sbjct 7071 TTTACCAACACCAGGTTCACCGATAAGAACTGGGTTGTTCTTGGT 7027 >seq279 Length=32837 Score = 93.3 bits (102), Expect = 9e-14 Identities = 256/386 (66%), Gaps = 16/386 (4%) Strand=Plus/Plus Query 332062 TACGATATTCATCATATGTTGTTGCACCAATTACACGAATCTCACCACGTGAAAGTGCTG 332121 |||| ||||||||| ||| || ||||| || | | | | ||||| | |||||||| Sbjct 8596 TACGGTATTCATCAAGTGTCGTAGCACCCATACAATGCAACGATCCACGAGCAAGTGCTG 8655 Query 332122 GCTTAAGCATATTGCTCATGTCCATAGAACCATTACTTGCGGAACCAGCCCCAACCATAA 332181 | |||||||||||| ||||| || |||| | | | |||||| || | | | Sbjct 8656 GTTTAAGCATATTGGCAGCATCCATCGATCCATCGCCTCC---ACCAGCACCCATAAGCA 8712 Query 332182 TATGAATTTCATCAATGAAAACAATAGTATTTTCA-CGTTTCTTT--AGTTCTTTTAGCA 332238 |||| | ||||||||| || | |||| | | || | | |||| | ||||| | || Sbjct 8713 TATGCAATTCATCAATAAACAAAATAACTTCTCCATTGCTGCTTTCCACATCTTTCAACA 8772 Query 332239 -AATTGTCGATGCGTTCTTCAAATTCACCACGATACTTAGTACCAGCAGTCAATGCACCA 332297 | || || ||||||||||||||||||||| | || | |||||| ||| ||| | Sbjct 8773 CTCCTTTCAAT-CGTTCTTCAAATTCACCACGAAATTTCGCTCCAGCAACCAACGCAGCT 8831 Query 332298 ACATTTAGTGAAAGAATTTCAACGTCT----TTCAGGTGTTCAGGTACGTTACCATCAGC 332353 | || | | | || |||| | |||| | |||||| || | ||| || Sbjct 8832 AAATCCAACGCGACAA----CACGTTTTTTCTTCATGCTTTCAGGCACTTCACCCGATGC 8887 Query 332354 AATAGCTTGTGCAAGCCCGTCGATGATTTGTGTTTTACCTACACCAGCTTCACCAGTGAG 332413 ||| ||||||||| || || || || ||||| ||||||| ||||||| | | Sbjct 8888 AATTCGTTGTGCAAGTCCTTCAGCAATCGCAGTCTTACCAACACCAGGTTCACCAATTAA 8947 Query 332414 AATAGCATTCTTTTTGGTTTTGCGAG 332439 | || ||| || |||||| | |||| Sbjct 8948 GACAGGATTATTCTTGGTTCTTCGAG 8973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1113754293012984