Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_027399.1 Length=346602 Score E Sequences producing significant alignments: (Bits) Value seq279 98.7 2e-15 >seq279 Length=32837 Score = 98.7 bits (108), Expect = 2e-15 Identities = 271/409 (66%), Gaps = 10/409 (2%) Strand=Plus/Minus Query 48249 GCACAGGAAGGTAAACTTGACCCAATGATCGGTCGCCAAAAAGAACTTCAATCACTAATT 48308 || || || || || |||||||| ||||||| || || | ||| ||| | | | Sbjct 9043 GCTCAAGATGGAAAGCTTGACCCTGTGATCGGCCGTGAAGAGGAAATTCGACGAGCTGTG 8984 Query 48309 GAAGTAATGGCACGTAAAAACAAAAAGAATGCTATTCTTACTGGTGATGCAGGAGTCGGT 48368 |||| || | || | || ||| || ||| || | | | |||||| | || || ||| Sbjct 8983 CAAGTGTTGTCTCGAAGAACCAAGAATAATCCTGTCTTAATTGGTGAACCTGGTGTTGGT 8924 Query 48369 AAAACTCAGATCGTCGATGGTTTTGCACAAGCCATTGCTGATGGTGACGTACCTGACTAT 48428 || ||| ||| | || || |||||||| ||||| ||||| || ||||| Sbjct 8923 AAGACTGCGATTGCTGAAGGACTTGCACAACGAATTGCATCGGGTGAAGTGCCTGAAAGC 8864 Query 48429 CTGAAAGGTGTTGAGGTATTATCTCTTAACGTTT--CTGCTGTAACTGCTGGTACAAAAT 48486 |||| | | || || || | | ||| |||| | |||||| | |||| Sbjct 8863 ATGAA--GAAAAAACGTGTTGTCGCGTTGGATTTAGCTGCGTTGGTTGCTGGAGCGAAAT 8806 Query 48487 ACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTAAAGAACTTAAAA--AACGA-G 48543 ||||||||||| |||||||| || |||| | | ||||| | ||| | | | | Sbjct 8805 TTCGTGGTGAATTTGAAGAACGATTGAAAGGAGTGTTGAAAGATGTGGAAAGCAGCAATG 8746 Query 48544 AAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGGGTGCTGGTGGTAGCAGCA 48603 | | || |||||||| ||||||||| | ||||| | |||||||||||||| || || Sbjct 8745 GAGAAGTTATTTTGTTTATTGATGAATTGCATATGCTTATGGGTGCTGGTGG-AG--GCG 8689 Query 48604 CTGGATCTATGGATATGAGCAATATCATGAAACCTGCACTTTCACGTGG 48652 |||||| |||||| |||||| | ||||| |||||| | ||||| Sbjct 8688 ATGGATCGATGGATGCTGCCAATATGCTTAAACCAGCACTTGCTCGTGG 8640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108919423397667