Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2584 212 5e-50 seq349 105 5e-18 >seq2584 Length=5567 Score = 212 bits (234), Expect = 5e-50 Identities = 313/438 (71%), Gaps = 9/438 (2%) Strand=Plus/Minus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 || ||||| |||||||| || || || || || ||||||||||||| | ||| Sbjct 3668 GTATTGGCATTTTTTGCAGCATCGGATGGTATTGTAAATGAAAATTTGGCCATGAATTTT 3609 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 | | ||||| ||| |||| ||||| ||||||||||||| ||||||||||| || ||| Sbjct 3608 TCCAATGAAGTACAAGTACCTGAAGCTAGATGTTTTTATGGATTTCAAATTGCTATCGAA 3549 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA---TGGGCAC 44026 ||||||||||| ||| | || | || || ||||| || ||||| || || | | Sbjct 3548 AATATTCATTCAGAAGTTTATTCGTTGCTCATTGATACTTATATCAAGGACATTGTGGA- 3490 Query 44027 GAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGAC 44086 | ||| |||| | || | || || || || | ||| | ||| |||||| | Sbjct 3489 -AAAAG-ATCGTGTTTTGAGGGCTATTGATACGATTCCTTGTGTACAACGTAAAGCTAAA 3432 Query 44087 TGGGCCCTTAAATGGATAAATT-CAAA--TGATTCTTTTGGAGAACGACTTGTCGCGTTT 44143 ||||| ||||||||| ||| |||| || | | | || |||||| |||| || ||| Sbjct 3431 TGGGCTCTTAAATGGTGCAATGGCAAAATTGCTGCGTATGCAGAACGTATTGTAGCCTTT 3372 Query 44144 GCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAA 44203 || | ||| ||||| ||||||||||||||||| ||| | || |||||| | |||||| Sbjct 3371 GCTGCTGTTGAAGGTATTTTCTTTTCAGGATCATTTTGCTCGATCTTTTGGCTCAAGAAA 3312 Query 44204 CGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTA 44263 || |||||||||||||| || | ||||| || || | || ||||||||| || | Sbjct 3311 CGTGGTTTGATGCCTGGTTTAAGCTTTTCGAACGAACTTATTTCTCGTGATGAGGGTCTT 3252 Query 44264 CATTGCGATTTTGCTTGC 44281 ||||| || ||||| ||| Sbjct 3251 CATTGTGACTTTGCCTGC 3234 >seq349 Length=38488 Score = 105 bits (116), Expect = 5e-18 Identities = 166/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 41116 TGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTC 41175 |||| |||||||| | ||||||||| || || || || || ||||| || || ||||||| Sbjct 16773 TGTACCAAAGATCTGCTGACATGGGTCTTGGTGTACCTTTCAACATTGCAAGCTATGCTC 16714 Query 41176 TGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGT 41235 | |||||| |||||||| || || ||| ||| |||| || ||| | || Sbjct 16713 TTCTCACGCGCATGATTGCTCAAGTGTGTGGTTTGAAAGCTGGAGATTTTATCCATGTCA 16654 Query 41236 TAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAA 41295 | || |||| ||| | || |||| ||||| || || | | ||||| || | |||| Sbjct 16653 TTGGGGATGCCCATGTGTATCTTAACCACATTGAACCTCTCAAGGAACAGCTTTCTCGAA 16594 Query 41296 AACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAACATTGATGATTT 41353 |||| | ||||||||||| | | | | || | || |||||||||||||||| Sbjct 16593 CACCTCGTCCATTTCCAACTTTGCGTTTGAATCCTGCCAAGAAAAACATTGATGATTT 16536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397430166974665