Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq419 143 2e-29 seq580 138 1e-27 seq224 86.0 5e-12 >seq419 Length=23932 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || ||||| || | |||||||| || ||||| || ||||| ||||||||||||| Sbjct 23286 TGCCACCACGCAAACGGAGGACCAAATGCAATGTAGATTCCTTTTGGATATTGTAGTCGC 23227 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| | || ||||||||||||||||||| || | || ||||| |||||||| || | Sbjct 23226 TCAAAGTTCGTCCGTCTTCGAGCTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAG 23167 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || ||||| ||||| | ||||| | | || | | ||| | | ||| | Sbjct 23166 GAATGCCTTCCTTATCTTGAATCTTTTGTTTCACGTTGTCGATGGAGTCCGATGGTTCGA 23107 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | || || |||| ||| || |||||||||||||| Sbjct 23106 CGTCAAGTGTGATCGTCTTACCGGTCAAAGTCTTAACAAAGATTTGCAT 23058 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || ||||| || | |||||||| || || || || ||||| |||||||| |||| Sbjct 23058 TGCCACCACGCAAACGAAGAACCAAATGCAATGTGGATTCCTTTTGGATATTGTAATCGC 22999 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| | | || | |||||||| || || || || | || ||||| |||||||| || | Sbjct 22998 TCAGGGTACGACCATCTTCGAGTTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGAG 22939 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCA 27197 | | || || ||||| ||||| | || | | | || | | ||| | ||||| || Sbjct 22938 GAATGCCTTCCTTATCTTGAATCTTTTGCTTGACGTTGTCAATGGAGTCCGATGGCT-CA 22880 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || | || ||||| || || || |||||||||||||| Sbjct 22879 ACATCGAGCGTGATTGTCTTCCCCGTGAGTGTCTTGACAAAGATTTGCAT 22830 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| |||||||| || ||||| || ||||| || ||||||||||| | | || | Sbjct 23500 CGCAAGACCAAATGCAATGTAGATTCCTTTTGGATGTTGTAGTCGCTTAAAGTACGGCCA 23441 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 |||||||| ||||||||||| ||||||| || |||||||| || || | || || || Sbjct 23440 TCTTCGAGTTGTTTACCGGCAAAAATGAGGCGTTGTTGATCTGGAGGAATGCCTTCCTTG 23381 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| | ||| | | || | | ||| | | ||| || || || || || Sbjct 23380 TCTTGGATCTTTTGTTTAACATTATCAATGGAGTCCGAAGGTTCGACGTCAAGTGTGATC 23321 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || |||| || || ||||| |||||||| Sbjct 23320 GTCTTACCGGTCAACGTCTTTACAAAAATTTGCAT 23286 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || ||||| || | ||||| || | || || || ||||| || |||||||| | Sbjct 23742 TGCCACCACGCAAACGAAGGACCAAGTGAAGAGTCGATTCCTTTTGGATGTTGTAGTCAC 23683 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | |||| | ||||| || |||||||| || ||||||| || |||||||| || | Sbjct 23682 TAAGGGTGCGGCCATCTTCAAGTTGTTTACCAGCAAAAATGAGGCGTTGTTGATCTGGAG 23623 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||| | || | | | || | | || | | ||| | Sbjct 23622 GAATGCCTTCCTTGTCTTGAATCTTTTGCTTGACGTTGTCAATGGAATCCGATGGTTCGA 23563 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || ||||| || | || ||||||| || ||||| |||||||||||| Sbjct 23562 CATCGAGAGTAATGGTCTTACCCGTCAATGTCTTCACGAAGATTTGCATA 23513 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || ||||| || ||||||||||| | |||| | |||||||| || || ||||| | Sbjct 23932 TCCTTTTGGATGTTGTAGTCGCTGAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCAAAG 23873 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 |||||||| |||||||| || || | || || || || |||||| | || | | Sbjct 23872 ATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTG 23813 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | || || | | ||| || || || || || | ||| ||||||| || || ||| Sbjct 23812 TCAATAGAATCCGAAGGTTCGACATCGAGGGTAATGGTTTTACCCGTCAATGTCTTGACA 23753 Query 27237 AAGATTTGCAT 27247 ||||||||||| Sbjct 23752 AAGATTTGCAT 23742 >seq580 Length=37562 Score = 138 bits (152), Expect = 1e-27 Identities = 174/238 (73%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 27012 TAATTAT-TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATT 27070 |||||| ||||||| || | ||||||||||| || | ||||| || |||||||| || Sbjct 7801 TAATTACATGCCTCCACGAAGACGCAATACCAAGTGGAGAGTAGATTCCTTTTGAATGTT 7860 Query 27071 GTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTG 27130 |||||| || | | || ||||||| || |||||||| ||| |||| | ||| ||||| Sbjct 7861 GTAGTCACTTAATGTACGACCGTCTTCAAGTTGTTTACCAGCGAAAATCAAACGTTGTTG 7920 Query 27131 ATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGT 27190 |||||| || | || || || || |||||| | || | | || | | ||| | Sbjct 7921 ATCCGGAGGGATGCCTTCCTTGTCTTGGATCTTTTGCTTGACATTATCAATCGAGTCGGA 7980 Query 27191 GGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | |||||| || | || || | ||| ||||||| |||||| ||||||||||||||| Sbjct 7981 TGGTTCAACATCCAAGGTAATGGTTTTTCCCGTCAAAGTTTTGACAAAGATTTGCATA 8038 >seq224 Length=84125 Score = 86.0 bits (94), Expect = 5e-12 Identities = 713/1138 (63%), Gaps = 38/1138 (3%) Strand=Plus/Minus Query 130729 TACAAGATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCT 130788 || ||| ||||| | ||||| || || | ||| ||| |||||||| || || || | Sbjct 28574 TATAAGTTCTTTCATCAAATATTTGTTGACAATTGTAAATTCACCAGCAAGAACACGACG 28515 Query 130789 AACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGT 130848 | ||| |||||| || || ||||||| ||||| |||||||| | |||||||| || Sbjct 28514 AGAGTACATGTTGGATGTAAATGGTTCAATTGATTCATTGTTGCCAAGAATTTGTGCAGT 28455 Query 130849 AGTTGCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTT 130908 || || || ||||| || | || |||||||| |||| ||| ||| | | | || Sbjct 28454 AGAAGCTGTTGGCATTGGGGCAAGCAAAAGAGAATTGCGAATACCATGCTTGGCCACTTG 28395 Query 130909 TCGCTTCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAA 130968 || | | | |||| ||||| ||| || || ||| |||||||||| | Sbjct 28394 AGCTTTGAGTGTAGCCCAGTCCCAAAGATTTGTTGGAGAAACACC---CCACATATCATA 28338 Query 130969 TTGTAGTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAGATTCCTTCGACACG 131028 ||| | || ||||| || | ||| | | | ||| |||||| || | Sbjct 28337 TTGGAAGATACCTTTGCTTACAGGAGAGCCTGCATACGTTTCGTATGGACCAAATTCTTT 28278 Query 131029 AGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATT 131088 || | || || | ||||| | | | | ||||| ||||| ||||| |||| Sbjct 28277 GGCAATTTCCATGGATGTTTCCATGGATGCATGGTAAATAGTTTCAAAGATTTGAATATT 28218 Query 131089 TAATTGTTTCGCTTG-GTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGA 131147 | || || |||| | | | || ||||| | ||| | |||||| || || || | Sbjct 28217 GAGTTTCTTGGCTTCAGCAGAT-TCAAAAGGATAACCCATGAGAATAAAGGCATCAGCAA 28159 Query 131148 GACCCTGTATCCCAACGCCCACCGGTCTATGTTTTAAATTACAT--TTACGCGAACATTC 131205 | || || | |||| || | || | ||| | ||| | | || || ||| Sbjct 28158 GCCCTTGAACACCAATACCAATAGGACGATGACGCATATTGCTTCGTTTAGCTTC--TTC 28101 Query 131206 GGTGGGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGAC 131265 | || || ||| || ||||| | ||||||||||||||| ||||||| |||| Sbjct 28100 AATAGGGTAGTAGTTGATTTCAATCACTTTGTTTAAATTGCGAGTAACAATTTTGGTGAT 28041 Query 131266 GCTTTTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACACA 131325 | | ||| ||| || ||||| ||| || || ||||||| || | | | Sbjct 28040 TTTATGCAAATTGGTAAAGTCAAATACACCA---TCA---TTGACAAATT--TTGAAAGA 27989 Query 131326 T--ATTGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCG 131383 || || |||| ||| || || ||| ||| || | ||| | | || ||| Sbjct 27988 GCAATCGATGCCAAATTGCACACAGCCACTTCATCTTTGCTTGTATATTCGATAACTTCA 27929 Query 131384 GCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACA 131443 |||||| ||||| || || || || || |||||||| || ||| | ||| | Sbjct 27928 CAGCACAAGTTACTCGATTTAATAGTACCTAAGTTTTGTTGGTTCGATTTGGAATTGCAA 27869 Query 131444 TGGTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGA 131503 || ||||||| ||| || || || || ||||||| ||||| || | |||| | | Sbjct 27868 GCATCTTTGTACAACATATATGGTGTACCAGTTTCGATTTGAGAATCGAGAATGG--CAA 27811 Query 131504 AAGAGTTTTCGAGCAGACAATTGATATTTGTATTGGCCGCGTTTTTCGTAAT----TTTC 131559 | | || || || ||||| | | | | | | || ||| | | ||| Sbjct 27810 ACCATAATT---GCTGAGCCTTGAT-TGTCTTTCGAGCACGACCTTCAGATTCAAATTTG 27755 Query 131560 GT--ACAACGTTTCAAAGTT-TTGGCCAAACGAACTGTCCAAATTGGGACATTCGCTGGG 131616 || |||| | |||||| | ||| || | | | || | ||| | | ||| | || Sbjct 27754 GTGTACAAAGCTTCAAATTCCTTGCCCCAGCAATCT-TGCAAGCCAGAAGCTTCATTTGG 27696 Query 131617 ACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCA 131676 || | || ||| | || || ||| || ||||||||||||||||| || | ||| Sbjct 27695 GCAAAAAAGACTCCAATCACCATTTGCTTCGACACGCTTCATAAACAAATCAGGGATCCA 27636 Query 131677 TAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAttttt-ttCAAAT 131735 || || || || ||||| | ||| | ||| | |||| |||||| || | || Sbjct 27635 CAAGGCATAAAAGAGATCACGAGCACGGTGTAGTTC-ATTGCCATGATTTTTCTTGAGAT 27577 Query 131736 TTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGC 131795 ||||| || ||||| || |||||||| ||||| | ||||| || | | || || | Sbjct 27576 CCAAAAACTCAAAAATATCAGCATGCCATGGTTCAAGATACATGGCAAACGAACCCTTAC 27517 Query 131796 GCTT---ACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGG 131850 |||| ||| ||||| | ||||| ||| | | | ||| |||| || | |||||| Sbjct 27516 GCTTACCACCACCTTGGTCAACATAGCGAGCGGTATCATTGAATACTCGAAGCATGGG 27459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424906780990296