Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq224 304 2e-77 seq2584 131 2e-25 seq1925 82.4 1e-10 >seq224 Length=84125 Score = 304 bits (336), Expect = 2e-77 Identities = 998/1528 (65%), Gaps = 55/1528 (4%) Strand=Plus/Minus Query 110666 TTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTAT 110725 ||||||||||| ||| ||||| || || | | ||| ||||| | ||| || Sbjct 28552 TTGTTGACAATTGTAAATTCACCAGCAAGAACACGACGAGAGTACATGTTGGATGTAAAT 28493 Query 110726 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 110785 ||||||| ||||||| || || | |||||||| || || |||||||||||||| || Sbjct 28492 GGTTCAATTGATTCATTGTTGCCAAGAATTTGTGCAGTAGAAGCTGTTGGCATTGGGGCA 28433 Query 110786 ATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCG 110845 | ||||||| || |||| ||| | || | | | ||||| | ||||||| Sbjct 28432 AGCAAAAGAGAATTGCGAATACCATGCTTGGCCACTTGAGCTTTGAGTGTAGCCCAGTCC 28373 Query 110846 TAGTTGAGCTTGGTTTCAC---CTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCG 110902 | || || ||| | | ||||||| ||| | || | | |||| | | Sbjct 28372 CAA---AGATTTGTTGGAGAAACACCCCACATATCATATTGGAAGATACCTTTGCTTACA 28316 Query 110903 GGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCC 110962 ||||| || || | ||||| || | ||| ||| || | ||| | | ||| Sbjct 28315 GGAGAGCCTGCATACGTTTCGTATGGACCAAATTCTTTGGCAATTTCCATGGATGTTTCC 28256 Query 110963 AGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAA 111022 | |||||| || || || ||||||||||| || ||| | | |||||||||| | || Sbjct 28255 ATGGATGCATGGTAAATAGTTTCAAAGATTTGAATATTGAGTTTCTTGGCTTCAGCAGAT 28196 Query 111023 TCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATA 111082 ||||| | || | | |||||| |||| || || ||||||||||| | ||||||| Sbjct 28195 TCAAAAGGATAACCCATGAGAATAAAGGCATCAGCAAGCCCTTGAACACCAATACCAATA 28136 Query 111083 GGTCTGTGTCGCATATTAGACTTTCGCGCAG--TCT-CAACGGGATAAAAATTTCTGTCA 111139 || | || |||||||| |||| || ||| ||| || || | || | ||| Sbjct 28135 GGACGATGACGCATATTGC---TTCGTTTAGCTTCTTCAATAGGGTAGTAGTTGATTTCA 28079 Query 111140 ATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCA 111199 || ||| ||||| ||| |||||||| || ||||||| ||| | || | | ||| Sbjct 28078 ATCACTTTGTTTAAATTGCGAGTAACAATTTTGGTGATTTTATGCAAATTGGTAAAGTCA 28019 Query 111200 AAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACA 111259 || | | ||||||||| | |||| ||| || || |||||||||||||| ||| Sbjct 28018 AATACACCA------TCATTGACAAATTTTGAAAGAGCAATCGATGCCAAATTGCACACA 27965 Query 111260 GCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTC---TTA 111316 ||| ||||| || ||| || || | || ||| || ||||| |||| ||| Sbjct 27964 GCCACTTCATCTTTGCTTGTATATTCGATAACTTCACAGCACAAGTT---ACTCGATTTA 27908 Query 111317 ATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAG 111376 || || || || || | |||||| || ||||| ||||| ||||| | ||| || Sbjct 27907 ATAGTACCTAAGTTTTGTTGGTTCGATTTGGAATTGCAAGCATCTTTGTACAACATATAT 27848 Query 111377 GGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT-CGGCGGCTGGTAC 111435 || || || || || | || || | |||||| || ||| | | | | | || | Sbjct 27847 GGTGTACCAGTTTCGATTTGAGAATCGAGAATGGCAAACCATAATTGCTGAGCCTTG--- 27791 Query 111436 AATGGCGTTGG--CCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCA 111493 | || | || | | || || || | || | || ||||| | |||||||| |||| Sbjct 27790 ATTGTCTTTCGAGCACGACCTTCAGATTCAAATTTGGTGTACAAAGCTTCAAATTCCTTG 27731 Query 111494 CCCACCGCG-TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACC 111552 ||| | || || | || | || | | ||| || |||||| ||| | |||| Sbjct 27730 CCC-CAGCAATCTTGCAAGCCAGAAGCTTCATTTGGGCAAAAAAGACTCCAATCACCATT 27672 Query 111553 TTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-C 111611 | | || || |||||||| || | || || ||||||| || |||||||||| | | | Sbjct 27671 TGCTTCGACACGCTTCATAAACAAATCAGGGATCCACAAGGCATAAAAGAGATCACGAGC 27612 Query 111612 ACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC-TCAAGGAACTCCATGATATCCGCG 111670 || | | ||| | || || || || | | || | ||||| | ||||| || Sbjct 27611 ACGGTGTAG-TTCATTGCCATGATTTT-TCTTGAGATCCAAAAACTCAAAAATATCAGCA 27554 Query 111671 TGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACA 111727 |||||||| |||||||| | || | || ||||| || || ||| |||| | ||| Sbjct 27553 TGCCATGGTTCAAGATACATGGCAAACGAACCCTTACGCTTACCACCACCTTGGTCAACA 27494 Query 111728 TAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTT 111787 ||||| || || | || ||||| |||||||| ||||| ||||| | ||| ||||| Sbjct 27493 TAGCGAGCGGTATCATTGAATACTCGAAGCATGGGAATGATACCGTTCGATGAGCCATTG 27434 Query 111788 GTCCCCCGAATACGAG-ATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 111846 || || |||||| | |||| ||| | | || ||||| | || || ||||| || Sbjct 27433 GTACCACGAATATAACTATTTGTTGAG-CGAATATTGTGGATATTCACGCCGATACCACC 27375 Query 111847 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 111906 |||||| || || || ||||| | | | ||| |||| ||||| | || || || Sbjct 27374 AGCCCATTTGGAAATACAAGCACATTGTTTCAAAGTATCATAAATACCTTCAATCGAATC 27315 Query 111907 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAA 111966 ||||| |||| | ||| |||||| |||| || || | ||| |||||||||||||| Sbjct 27314 GTCCTTCATGGCCAAAAGAAAGCAAGACGACAATTGTGGACGTGGAGTACCAGCATTGAA 27255 Query 111967 GAGGGTTGGTGT----TGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCA 112022 || || ||||| || ||||| |||||| ||| ||| | || || || |||| Sbjct 27254 AAGAGTAGGTGTAGCATGGGTGAA-GAACAT---TTGACTCATGTATTCATAAGTGTCCA 27199 Query 112023 AGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTG 112082 | | | |||| ||||| || || || | || || ||||||| ||||| ||| | Sbjct 27198 AAGCTCCAGCAATATCTTCTTTATGAATACCAACAGCAACACGCATGATCATGTGCTGAG 27139 Query 112083 GGGTTTCCATGAGGATGCCATCGAGCCGTTGAAG---ATAGCTCTTCTCAAGGGTTTTGA 112139 | ||| | | |||| | |||||| ||||||||| || | ||||| | Sbjct 27138 GTCGTTCACAAACTTTTCCATTTA---CTTGAAGCAAATAGCTCTTTTCCAAAGTTTTAA 27082 Query 112140 GACCAAAGTAACCAAAATCATAGTCCCG 112167 ||||||||| || | ||| | || || Sbjct 27081 ATCCAAAGTAATCATATTCAAAATCACG 27054 >seq2584 Length=5567 Score = 131 bits (144), Expect = 2e-25 Identities = 337/499 (68%), Gaps = 16/499 (3%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || ||||| ||||| || || ||||||||||| || | ||| || | ||||| Sbjct 2950 TATTCACCGACACGCTTTTCGAAAAAGTTGGTCTTTCCTTGAAGAGATATCATGTCCATC 3009 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGAGGAGACG 122489 |||| ||||||||||| || || ||| | ||| | | |||| || ||| || || Sbjct 3010 CAGTCGAATGGATTCTTGGCATTGTAAA-GCTTGGTAGCTCCAAGGGCTTGGAGAAGGCG 3068 Query 122490 ATCCGACACATACT-CAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGT-TA 122547 ||| | |||| | | ||||||| ||| |||| ||||||||||| ||||| | || Sbjct 3069 ATCAG-CACAGAATTCAATGTATTCGCACATGAGAGATGAGTTCATACCAATGAGTTCTA 3127 Query 122548 CATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCG 122607 | ||| || | ||| ||| || || ||||| |||| || || | || | Sbjct 3128 C-TGGAAGAGATTCCGAGACAAATTGCTTTTCAATTGCAACAGCATCCCCAATAATTTCA 3186 Query 122608 TGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTC---CACGGCAAAC 122664 || ||| |||| ||| | | || | || | ||| | | || |||||| Sbjct 3187 TGAATACGTTCGTTAGAAAGCTTGTT--GATGAGCTTGGAATACATGAGGCA-GGCAAAG 3243 Query 122665 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATG 122724 || || ||||||||||| || ||||||||||| || || |||| || ||| ||||| Sbjct 3244 TCACAATGAAGACCCTCATCACGAGAAATAAGTTCGTTCGAAAAGCTTAAACCAGGCATC 3303 Query 122725 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 122784 | ||| || ||||| | |||| | || | ||| ||||| || || ||||| ||||| || Sbjct 3304 AAACCACGTTTCTTGAGCCAAAAGATCGAGCAAAATGATCCTGAAAAGAAAATACCTTCA 3363 Query 122785 ACACACGCAAACGCAAAAAGGCGTTCGGC-GAAGGAGCGAGACTTTG-CATCAAACCATT 122842 ||| ||||| || | || ||||| || | | ||| | |||| ||| |||||| Sbjct 3364 ACAGCAGCAAAGGCTACAATACGTTCTGCATACGCAGC--AATTTTGCCATTGCACCATT 3421 Query 122843 TCATTGCCCATTTCGCCTT 122861 | | |||||||| || || Sbjct 3422 TAAGAGCCCATTTAGCTTT 3440 >seq1925 Length=14366 Score = 82.4 bits (90), Expect = 1e-10 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 181624 AACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAA 181683 |||| ||||| ||||| ||| | ||||| | | ||||||| | | |||||||||||| Sbjct 8040 AACCAGTACCAATACCTTCGTTACCATTGATCAATGCCATTGGGATAATTGGCATGTAAA 8099 Query 181684 AGTCTGGTTCAATGGAGCGTCCATCATCGTCCAAGTAGTT 181723 |||| |||||||| || | || || || ||||||||||| Sbjct 8100 AGTCAGGTTCAATCGAAAGACCTTCTTCTTCCAAGTAGTT 8139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627990133816800