Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq224 205 1e-47 seq1768 96.9 4e-15 >seq224 Length=84125 Score = 205 bits (226), Expect = 1e-47 Identities = 790/1230 (64%), Gaps = 31/1230 (3%) Strand=Plus/Minus Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402 |||||||||| | |||| |||||||| | | || || || || | || || ||||| Sbjct 28349 CCACATATCATATTGGAAGATACCTTTGCTTACAGGAGAGCCTGCATACGTTTCGTATGG 28290 Query 118403 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAA 118462 || | | || | ||| | | || | || ||| || || || |||||||| Sbjct 28289 ACCAAATTCTTTGGCAATTTCCATGGATGTTTCCATGGATGCATGGTAAATAGTTTCAAA 28230 Query 118463 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-AATAA 118521 || || ||| | | |||||| || | || ||||| | || || | ||||| Sbjct 28229 GATTTGAATATTGAGTTTCTTGGCTTCAGCAGATTCAAAAG-GATAACCCATGAGAATAA 28171 Query 118522 ATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCC 118581 | |||| || || ||||| ||||| | ||||| || ||||| | |||||| |||| Sbjct 28170 AGGCATCAGCAAGCCCTTGAACACCAATACCAATAGGACGATGACGCATATTG--CTTCG 28113 Query 118582 G--AGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 118639 ||| || | || || | || | || || || | |||| ||| || || Sbjct 28112 TTTAGCTTCTTCAATAGGGTAGTAGTTGATTTCAATCACTTTGTTTAAATTGCGAGTAAC 28053 Query 118640 AACCTTTGTGATTTCATGAAGCTTTTCGTAA--TCAAAACTGCGAGTCTCTTCATTGACA 118697 || || ||||||| ||| | || |||| ||||| | | ||||||||| Sbjct 28052 AATTTTGGTGATTTTATGCAAATTG--GTAAAGTCAAATACACCA------TCATTGACA 28001 Query 118698 TACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTAC 118757 | || | ||| || || || |||| ||| ||||||| ||||| || || || Sbjct 28000 AATTTTGAAAGAGCAATCGATGCCAAATTGCACACAGCCACTTCATCTTTGCTTGTATAT 27941 Query 118758 TCTATAATTTCCGTGCACAAGTTTGAACTC---TTAATGGTGCCCAAGTTCTTTTGATTT 118814 || |||| ||| ||||||||| |||| ||||| || || ||||| | ||| || Sbjct 27940 TCGATAACTTCACAGCACAAGTT---ACTCGATTTAATAGTACCTAAGTTTTGTTGGTTC 27884 Query 118815 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGAC 118874 || || | || || ||||| ||||| | ||| ||||| || || || || |||| || Sbjct 27883 GATTTGGAATTGCAAGCATCTTTGTACAACATATATGGTGTACCAGTTTCGATTTGAGAA 27824 Query 118875 TTGAGAATAGCCTTCCAGACATCGGCAGC-TGGCACAGTGGCGTTGG--CTCGCCCCTCT 118931 | |||||| || ||| | | ||| | | | || | || | | || || || Sbjct 27823 TCGAGAATGGCAAACCATAATTGCTGAGCCTTG---ATTGTCTTTCGAGCACGACCTTCA 27767 Query 118932 TCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGT 118991 || | || ||||| | |||||||| || | ||| | ||| | || | Sbjct 27766 GATTCAAATTTGGTGTACAAAGCTTCAAATTCCTTGCCCCAGCAATCTTGCAAGCCAGAA 27707 Query 118992 GCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGG 119051 || | || |||||| || ||| ||| | |||| | || || |||||||| || | Sbjct 27706 GCTTCATTTGGGCAAAAAAGACTCCAATCACCATTTGCTTCGACACGCTTCATAAACAAA 27647 Query 119052 TCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 119111 || |||||||| | || | |||||||| ||| || | ||||| || ||||| Sbjct 27646 TCAGGGATCCACAAGGCATAAAAGAGATCACGAGCACGGTGTAGTTCATTGCCATGATTT 27587 Query 119112 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 119171 | |||||||| || | ||||| || ||||| ||||| || |||| || | Sbjct 27586 TTCTTGAGATCCAAAAACTCAAAAATATCAGCATGCCATGGTTCAAGATACATGGCAAAC 27527 Query 119172 GACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGA 119228 || |||||||| || |||| | |||| ||||| | || || | || ||||| ||| Sbjct 27526 GAACCCTTACGCTTACCACCACCTTGGTCAACATAGCGAGCGGTATCATTGAATACTCGA 27467 Query 119229 AGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCT 119288 ||||| ||||||||||| | ||| |||||| || || |||||| | || | | Sbjct 27466 AGCATGGGAATGATACCGTTCGATGAGCCATTGGTACCACGAATATAACTATTTGTTGAG 27407 Query 119289 CTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCC 119348 | | || |||||| | || || ||||| || ||||| || || || || || | Sbjct 27406 CGAATATTGTGGATATTCACGCCGATACCACCAGCCCATTTGGAAATACAAGCACATTGT 27347 Query 119349 GTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTC 119408 | | | | | || || || || ||||| || |||| | || | || ||||| | Sbjct 27346 TTCAAAGTATCATAAATACCTTCAATCGAATCGTCCTTCATGGCCAAAAGAAAGCAAGAC 27287 Query 119409 GACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATA 119468 |||| ||| || | || |||||||| ||||| ||||| ||||| || ||| |||| | Sbjct 27286 GACAATTGTGGACGTGGAGTACCAGCATTGAAAAGAGTAGGTGTAGCATGGGTGAAGAAC 27227 Query 119469 CCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCG 119528 ||| ||| | || || || ||||| | | | ||| ||||| |||||||| Sbjct 27226 ATTTGACTCATGTATTCATAAGTGTCCAAAGCTCCAGCAATATCTTCTTTATGAATACCA 27167 Query 119529 ATCGAGACCCGCATAAACATGTATTGGGGT 119558 | | || ||||| | ||||| || ||| Sbjct 27166 ACAGCAACACGCATGATCATGTGCTGAGGT 27137 >seq1768 Length=20761 Score = 96.9 bits (106), Expect = 4e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 179930 CTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCAC 179989 |||||||||||| |||||| | | |||||||| ||||| || ||||| || ||| | Sbjct 2773 CTGAAGCATCTCTGACATTAAGAAATTTCCCACGCAGAGGAAATACACCATAAGTATCTC 2832 Query 179990 GACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGA 180049 |||||| ||||| || ||||| ||||| || | || || |||||||| || || | || Sbjct 2833 TACCAACAACAGAAAGCCCAGCCACTGCAAGTGCTTTAGCCGAATCACCTTCAGTTAAGA 2892 Query 180050 TGAGCGTACACTTTCCAGATTGTGCCGTCCCTGCCTTGTTCGCGTCGTCCAACTTGGG 180107 | | || || | | | || |||| | || ||| || || || ||||| ||||| Sbjct 2893 TCAATGTGCAATCTGCTGAACGTGCACTGCCAGCCAAATTAGCATCCTCCAATTTGGG 2950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618393973563480