Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq224 237 2e-57 seq2584 109 6e-19 >seq224 Length=84125 Score = 237 bits (262), Expect = 2e-57 Identities = 910/1404 (65%), Gaps = 59/1404 (4%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || || | ||||||||| ||||| |||| | | Sbjct 27138 CCTCAGCACATGATCATGCGTGTTGCTGTTGGTATTCATAAAGAAGATATTGCTGGAGCT 27197 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCA----ACACCAACCCT 104337 ||||| || || || | ||| ||| |||||| ||||| || ||||| || || Sbjct 27198 TTGGACACTTATGAATACATGAGTCAA---ATGTTC-TTCACCCATGCTACACCTACTCT 27253 Query 104338 CTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 104397 |||||||||||||| ||| | || ||| |||| |||||| ||| | |||| ||||| Sbjct 27254 TTTCAATGCTGGTACTCCACGTCCACAATTGTCGTCTTGCTTTCTTTTGGCCATGAAGGA 27313 Query 104398 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 104457 || || || | ||||| |||| ||| | | | ||||| || || || ||||| Sbjct 27314 CGATTCGATTGAAGGTATTTATGATACTTTGAAACAATGTGCTTGTATTTCCAAATGGGC 27373 Query 104458 TGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAAT-CTCGTATTCGGGGGA 104516 ||| ||||| || || | ||||| || | | ||| |||| | |||||| || | Sbjct 27374 TGGTGGTATCGGCGTGAATATCCACAATATTCG-CTCAACAAATAGTTATATTCGTGGTA 27432 Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 | ||||| ||| | ||||| ||||| |||||||| ||||| || | || || |||| Sbjct 27433 CCAATGGCTCATCGAACGGTATCATTCCCATGCTTCGAGTATTCAATGATACCGCTCGCT 27492 Query 104577 ATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 |||| | |||| ||| || || ||||| || | || | |||||||| ||||||| Sbjct 27493 ATGTTGACCAAGGTGGTGGTAAGCGTAAGGGTTCGTTTGCCATGTATCTTGAACCATGGC 27552 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAA---GGTGACGAGGA--GGC 104688 | || ||||| | ||||| ||| |||||| || || | | || | Sbjct 27553 ATGCTGATATTTTTGAGTT------TTTGGATCTCAAGAAAAATCATGGCAATGAACTAC 27606 Query 104689 GCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 104747 | |||| || |||||||| | || | ||||| || ||| | || |||||| | || | Sbjct 27607 ACCGTGCTCGTGATCTCTTTTATGCCTTGTGGATCCCTGATTTGTTTATGAAGCGTGTCG 27666 Query 104748 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCG 104807 | | | ||| ||||| ||| ||||| ||| | | || |||| | ||| | Sbjct 27667 AAGCAAATGGTGATTGGAGTCTTTTTTGCCCAAATGAAGCTTCTGGCTTGCAAGATTGCT 27726 Query 104808 TGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGA 104867 ||| |||| |||||||| | ||||| || | || |||||||| || || Sbjct 27727 GGGGCAAGGAATTTGAAGCTTTGTACACCAAATTTGAATCTGAAGGTCGTGCTCGAAAGA 27786 Query 104868 CGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 | | ||| | | ||| || |||||| | ||||||| ||| |||||||||| Sbjct 27787 CAATCAAGGCTCAGCAATTATGGTTTGCCATTCTCGATTCTCAAATCGAAACTGGTACAC 27846 Query 104928 CATACATGCTTTACAAAGACGCCTGTAA-CCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 |||| ||| | |||||||| || || || | ||| | || ||| | || || ||| Sbjct 27847 CATATATGTTGTACAAAGATGCTTGCAATTCCAAATCG-AACCAACAAAACTTAGGTACT 27905 Query 104987 ATCAA---GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 105043 || || |||| || | || ||| | | |||| |||| ||||||||| | Sbjct 27906 ATTAAATCGAGT---AACTTGTGCTGTGAAGTTATCGAATATACAAGCAAAGATGAAGTG 27962 Query 105044 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA 105103 |||||||| || | ||||| || ||||| | || | ||| || || | | Sbjct 27963 GCTGTGTGCAATTTGGCATCGATTGCTCTTTCAAAATTTGT-----CAATGATGGTG-TA 28016 Query 105104 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163 ||||| | | || | || || | || |||| ||| || || |||||| ||| Sbjct 28017 TTTGACTTTACCAATTTGCATAAAATCACCAAAATTGTTACTCGCAATTTAAACAAAGTG 28076 Query 105164 ATTGATAGAAATTTTTACCCCGTTG-AGA--CTGCTCGTAAATCTAATATGAGACACCGT 105220 ||||| | || | ||||| ||| ||| || || || | |||||| | || ||| Sbjct 28077 ATTGAAATCAACTACTACCCTATTGAAGAAGCTAAACG--AAGC-AATATGCGTCATCGT 28133 Query 105221 CCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT 105280 || |||||| | |||||||| || || || |||| || ||||| | | | ||| Sbjct 28134 CCTATTGGTATTGGTGTTCAAGGGCTTGCTGATGCCTTTATTCTCATGGGTTATCCTTTT 28193 Query 105281 GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCT 105340 || || | ||||| ||| || ||||| | || ||||| || || || || || | Sbjct 28194 GAATCTGCTGAAGCCAAGAAACTCAATATTCAAATCTTTGAAACTATTTACCATGCATCC 28253 Query 105341 CTTGAGGCGAGTTCA---GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGT 105397 | || | | || | ||| || || | ||||||||| ||||| | || || Sbjct 28254 ATGGAAAC--ATCCATGGAAATTGCCAAAGAAT-TTGGTCCATACGAAACGTATGCAGGC 28310 Query 105398 TCTCCAGCTTCACAAGGGGTGCTT-CAATTTGATATGTGGGAAG---GTGAGACCAAGCT 105453 ||||| | | ||| || ||| |||| ||||||||||| | | || || || Sbjct 28311 TCTCCTG-TAAGCAAAGGTATCTTCCAATATGATATGTGGGGTGTTTCTCCAACAAATCT 28369 Query 105454 TCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCT 105513 | | ||||||| | ||||| | | | || | ||| |||| || ||| Sbjct 28370 T---TGGGACTGGGCTACACTCAAAGCTCAAGTGGCCAAGCATGGTATTCGCAATTCTCT 28426 Query 105514 CCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTT 105573 | | || |||||||||||||| || || |||||||| | || || ||||||| | Sbjct 28427 TTTGCTTGCCCCAATGCCAACAGCTTCTACTGCACAAATTCTTGGCAACAATGAATCAAT 28486 Query 105574 TGAACCCTACACGACGAACATCTA 105597 |||||| | || | ||||| || Sbjct 28487 TGAACCATTTACATCCAACATGTA 28510 >seq2584 Length=5567 Score = 109 bits (120), Expect = 6e-19 Identities = 350/538 (65%), Gaps = 4/538 (1%) Strand=Plus/Minus Query 94408 TGGGAACTCTATAAGAAGGCTCAAATGAGTAATTGGACTGCTGAAGAGGTAGATCTCTCA 94467 |||||| | |||||||| ||| || ||| ||||||||| ||||| ||||||| Sbjct 3785 TGGGAAATGTATAAGAAAGCTGAAGCTAGTTTTTGGACTGCAGAAGAATTAGATCTTGTC 3726 Query 94468 AAGGATTTGGACGATTGGAAGACTCTAAATGAAAATGAAAAGAAATTCATAAAATACATC 94527 | ||| || | ||||||| | || | || |||||| || || | | | Sbjct 3725 CATGATATGAAAGATTGGACAAAACTTACGGACAATGAACGATTCTTTATTACCCATGTA 3666 Query 94528 CTGGCATTCTTTGCTGGATCCGATGGAATTGTTTTTGAGAATATCAATAACAACTTTGCT 94587 ||||||| ||||| | ||| ||||| ||||| ||| ||| | | || ||| | Sbjct 3665 TTGGCATTTTTTGCAGCATCGGATGGTATTGTAAATGAAAATTTGGCCATGAATTTTTCC 3606 Query 94588 GATGAGGTGCAATCCTCTGAAGCGAGATCCTTCTATGCGTATCAGTGTCATAATGAAATG 94647 |||| || ||| ||||||| |||| || |||| | ||| | || |||| Sbjct 3605 AATGAAGTACAAGTACCTGAAGCTAGATGTTTTTATGGATTTCAAATTGCTATCGAAAAT 3546 Query 94648 GTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAG 94707 | ||| || || ||||| || | ||||| ||||| || || || Sbjct 3545 ATTCATTCAGAAGTTTATTCGTTGCTCATTGATACTTATATCAAGGACATTGTGGAAAAA 3486 Query 94708 AAGCAGCTCTTTGAAGCC-ATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGC 94766 | | | ||||| | | || | || |||| ||| | ||| ||||| | ||||| Sbjct 3485 GATCGTGT-TTTGAGGGCTATTGATACGATTCCTTGTGTACAACGTAAAGCTAAATGGGC 3427 Query 94767 TATGAAGTGGTTTGATA-CAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGT 94825 | | || |||| || |||| | || | | | ||| || || | | || ||||| Sbjct 3426 TCTTAAATGGTGCAATGGCAAAATTGC-TGCGTATGCAGAACGTATTGTAGCCTTTGCTG 3368 Query 94826 GTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAG 94885 |||||| ||||| ||||| || || || || ||| | || | |||||||||||| || | Sbjct 3367 CTGTTGAAGGTATTTTCTTTTCAGGATCATTTTGCTCGATCTTTTGGCTCAAGAAACGTG 3308 Query 94886 GTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCA 94943 || | ||||| ||| | |||| || ||||| ||||| |||||||| ||||| || || Sbjct 3307 GTTTGATGCCTGGTTTAAGCTTTTCGAACGAACTTATTTCTCGTGATGAGGGTCTTCA 3250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583221918376920