Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thraustotheca_20clavata_20[genbank_20GCA_5F002081575.1_202017-04-06] 5,333 sequences; 39,100,730 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq1925 102 4e-17 >seq1925 Length=14366 Score = 102 bits (112), Expect = 4e-17 Identities = 240/359 (67%), Gaps = 9/359 (3%) Strand=Plus/Plus Query 64892 CCTGTGCCAATACCCTTTGAGCCATTTATTAAAATCATCGGAATAATTGGTGCATAAAAG 64951 || || |||||||| | ||||| || || ||| || |||||||| |||||| Sbjct 8042 CCAGTACCAATACCTTCGTTACCATTGATCAATGCCATTGGGATAATTGGCATGTAAAAG 8101 Query 64952 ATAGGCTCAACAATGAGACCATCATCATCCAAATACTTCAAAATGGCATCATCCTCTTTT 65011 ||| |||| ||||| || || ||||| || ||||||| || ||| ||| | Sbjct 8102 TCAGGTTCAATCGAAAGACCTTCTTCTTCCAAGTAGTTCAAAA---CACTATCATCTAAT 8158 Query 65012 GGAA-ATATAGAA--CGAGTTATTTTATTCAATTGAGTATAAATATATCTTTCGGATGCG 65068 ||| ||| | || || || | || | ||||| || | | ||| | || || Sbjct 8159 GGATGATACACAAGACGTGTCAAATTTTCCAATTTTGTGAACACATAACGAGCGCTGGCA 8218 Query 65069 TGGTCTTGTCCAGTTCGT---CGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATA 65125 |||| ||| | || || || ||||| || ||||| || | |||||| | | Sbjct 8219 GCATCTTTACCACCTTGTAAACGAGTACCAAATTGCCCATTAGGAGAAAGTAAATTTAAA 8278 Query 65126 TTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAAACTCGCTTCA 65185 ||||| |||| | | | || ||||| || || || | ||| |||||| |||||| Sbjct 8279 TTGTTGCTTCCAACATAGTCTTGTGCCATACCAATGATCGTCCCATGTAAACTTGCTTCA 8338 Query 65186 CCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTC 65244 || ||||| ||| | || ||||||||||| || ||| |||||||||||||| ||||| Sbjct 8339 CCATGATGGTATGCAGAGTGTTCAGAGACGTAACCAGCCAATTGAGCAACTTTGATTTC 8397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235664681757450